Tutorial Videos
1. GEO GSE tutorials:
Title | Movie | Author | Content |
---|---|---|---|
GEO Data Simple Search | Mardi Nenni | Navigating the simple search interface for Xenopus GEO datasets on Xenbase. | |
GEO Data Advanced Search | Mardi Nenni | Navigating the advanced search interface for Xenopus GEO datasets on Xenbase. | |
Navigating a GSE Page | Mardi Nenni | Navigating a GSE page for Xenopus GEO datasets on Xenbase. | |
Heat map visualizations using GEO data sets | Mardi Nenni | Generating heat map visualizations using GEO data sets on Xenbase. Examples include samples with one control, samples with different controls, and visualizing a custom gene list. |
2. JBrowse tutorials:
Title | Movie | Author | Content |
---|---|---|---|
Introduction to JBrowse | Vaneet Lotay | Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome. | |
JBrowse tutorial 1 | Vaneet Lotay | Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type (UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene. | |
JBrowse tutorial 2 | Vaneet Lotay | Saving data from a track on JBrowse for a particular region of interest in the genome. | |
JBrowse tutorial 3 | Vaneet Lotay | How to add a local/custom track from your PC to the JBrowse browser at Xenbase. | |
JBrowse tutorial 4 | Vaneet Lotay | Exploring Xenbase GEO tracks with the faceted track selector in JBrowse. | |
FlyBase JBrowse tutorial | FlyBase | Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc. |
3. Xenbase tutorials:
Title | Movie | Author | Content |
---|---|---|---|
How to use Xenbase version 3.x | Kevin A. Burns | Introduction to features on Xenbase 3.x, how to search, and features you may be missing out on. | |
How to use Xenbase version 2.x - Vidoe 1 | Kevin A. Burns | An overview of the useful features in Xenbase | |
How to use Xenbase version 2.x - Video 2 | Kevin A. Burns | The five most useful pages in Xenbase. | |
How to Use Xenbase version 2.x - Video 3. | Kevin A. Burns | Advanced Expression and Literature Searches. |