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XB-GRNA-23659708
gRNA Name:
pgat gRNA1
Synonyms: pat-T1
Genomic Target: pgat
PAM Sequence: tgg
Sequence: 5' GGCCTGTAAGCAAAACATTT 3'
Synonyms: pat-T1
Genomic Target: pgat
PAM Sequence: tgg
Sequence: 5' GGCCTGTAAGCAAAACATTT 3'
Genomic Target | tropicalis | ||||||
Identities | 20/20 | ||||||
genome
gRNA
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5' AAATGTTTTGCTTACAGGCC 3' |||||||||||||||||||| 3' TTTACAAAACGAATGTCCGG 5' |
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Genomic Alignments | Position | Identity | Strand | Target | Genomic Target | ||
laevis 9.2 | chr4L:89568719..89568738 | 19/20 | Sense | off-target | sec16b.L | ||
Scaffold61:253344..253363 | 17/20 | Antisense | off-target | arl3.L | |||
chr2S:109569116..109569135 | 17/20 | Antisense | off-target | dach1.S | |||
chr3S:70633195..70633214 | 17/20 | Antisense | off-target | magi2.S | |||
chr9_10L:2170035..2170054 | 17/20 | Sense | off-target | erbb2.L | |||
chr5L:53063655..53063674 | 17/20 | Antisense | off-target | galnt2.L | |||
chr1S:139852774..139852793 | 17/20 | Sense | off-target | slc12a2.S | |||
chr8L:2605793..2605812 | 17/20 | Antisense | off-target | cacna1b.L | |||
chr8L:9664965..9664984 | 16/20 | Antisense | off-target | nek6.L | |||
chr8S:41023989..41024008 | 16/20 | Sense | off-target | nek6.S | |||
chr1L:195566329..195566348 | 16/20 | Sense | off-target | mtrex.L | |||
chr8L:3904409..3904428 | 16/20 | Antisense | off-target | qsox2.L | |||
chr2L:27543081..27543100 | 16/20 | Sense | off-target | Xelaev18011603m | |||
chr1S:106908898..106908917 | 18/20 | Antisense | unknown | ||||
chr1S:90712760..90712779 | 18/20 | Antisense | unknown | ||||
chr1S:95884698..95884717 | 18/20 | Antisense | unknown | ||||
chr3S:78018753..78018772 | 18/20 | Antisense | unknown | ||||
chr5S:111568180..111568199 | 18/20 | Sense | unknown | ||||
chr8S:51126384..51126403 | 18/20 | Sense | unknown | ||||
chr1S:73080958..73080977 | 17/20 | Sense | unknown | ||||
chr2S:111994440..111994459 | 17/20 | Sense | unknown | ||||
chr2S:12031191..12031210 | 17/20 | Antisense | unknown | ||||
chr2S:57485739..57485758 | 17/20 | Antisense | unknown | ||||
chr3L:139980453..139980472 | 17/20 | Antisense | unknown | ||||
chr7S:79657293..79657312 | 17/20 | Sense | unknown | ||||
chr1L:207370373..207370392 | 16/20 | Sense | unknown | ||||
chr1S:171148434..171148453 | 16/20 | Sense | unknown | ||||
chr2S:115991710..115991729 | 16/20 | Antisense | unknown | ||||
chr9_10S:72177794..72177813 | 16/20 | Sense | unknown | tropicalis 10.0 | Chr5:138707782..138707801 | 20/20 | Sense | target | pgat |
Chr1:19174128..19174147 | 18/20 | Antisense | off-target | spon2 | |||
Chr5:49099906..49099925 | 17/20 | Sense | off-target | stxbp5 | |||
Chr10:39816466..39816485 | 17/20 | Antisense | off-target | epb41l1 | |||
Chr8:29215773..29215792 | 16/20 | Sense | off-target | nek6 | |||
Chr7:117269039..117269058 | 16/20 | Sense | off-target | pold1 | |||
Chr4:54672733..54672752 | 18/20 | Antisense | unknown | ||||
Chr1:97248564..97248583 | 17/20 | Antisense | unknown | ||||
Chr5:87794364..87794383 | 17/20 | Antisense | unknown | ||||
Chr3:133212272..133212291 | 16/20 | Sense | unknown | ||||
Chr4:63033377..63033396 | 16/20 | Antisense | unknown | ||||
Chr6:118144405..118144424 | 16/20 | Sense | unknown | ||||
Publications | |||||||
???morpholino.displaySummary.papersFirst??? |
Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis., Development 2014 |
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???morpholino.displaySummary.papersRecent??? | |||||||
???morpholino.displaySummary.papersAll??? |