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XB-GRNA-23659488
gRNA Name:
xbp1 gRNA1
Synonyms: trop xbp1 T1
Genomic Target: xbp1
PAM Sequence: AGG
Sequence: 5' CAGCACAGACTGCTCGGGACAGG 3'
Synonyms: trop xbp1 T1
Genomic Target: xbp1
PAM Sequence: AGG
Sequence: 5' CAGCACAGACTGCTCGGGACAGG 3'
![Run BLAST on sequence](img/icons/rocket.gif)
Genomic Target | tropicalis | laevis.L | laevis.S | ||||
Identities | 23/23 | 23/23 | 22/23 | ||||
genome
gRNA
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5' CCTGTCCCGAGCAGTCTGTGCTG 3' ||||||||||||||||||||||| 3' GGACAGGGCTCGTCAGACACGAC 5' |
5' CCTGTCCCGAGCAGTCTGTGCTG 3' ||||||||||||||||||||||| 3' GGACAGGGCTCGTCAGACACGAC 5' |
5' CCTGTCCCGTGCAGTCTGTGCTG 3'
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3' GGACAGGGCTCGTCAGACACGAC 5' |
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Genomic Alignments ![]() |
Position | Identity | Strand | Target | Genomic Target | ||
laevis 9.2 | chr1L:167315774..167315796 | 23/23 | Sense | target | xbp1.L | ||
chr1S:138762109..138762131 | 22/23 | Sense | target | xbp1.S | |||
chr5L:134097697..134097719 | 20/23 | Antisense | off-target | pxdn.L | |||
chr1L:199791825..199791847 | 19/23 | Sense | off-target | oxct1.L | |||
Scaffold55:99410..99432 | 19/23 | Sense | off-target | ccdc85c.L | |||
chr7S:71207074..71207096 | 19/23 | Antisense | unknown | tropicalis 10.0 | Chr1:166347339..166347361 | 23/23 | Sense | target | xbp1 |
Chr2:174656931..174656953 | 20/23 | Antisense | off-target | LOC116406442 | |||
Publications | |||||||
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