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XB-GRNA-23659167
gRNA Name:
fxr1 gRNA6
Synonyms: T8L fxr1
Genomic Target: fxr1
PAM Sequence: TGG
Sequence: 5' TCAGGACAATGGTTCTTAAATGG 3'
Synonyms: T8L fxr1
Genomic Target: fxr1
PAM Sequence: TGG
Sequence: 5' TCAGGACAATGGTTCTTAAATGG 3'
Genomic Target | tropicalis | laevis.L | laevis.S | ||||
Identities | 22/23 | 23/23 | 20/23 | ||||
genome
gRNA
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5' CCATTTAAGAACCATTGTCTTGA 3'
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3' GGTAAATTCTTGGTAACAGGACT 5' |
5' CCATTTAAGAACCATTGTCCTGA 3' ||||||||||||||||||||||| 3' GGTAAATTCTTGGTAACAGGACT 5' |
5' CCATTTCAGAACCATTGTCTTTA 3' |||||| |||||||||||| | | 3' GGTAAATTCTTGGTAACAGGACT 5' |
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Genomic Alignments | Position | Identity | Strand | Genomic Target | |||
laevis 9.2 | chr5L:104553585..104553607 | 23/23 | Sense | target | fxr1.L | ||
chr5S:89185604..89185626 | 20/23 | Sense | target | fxr1.S | |||
chr1L:179466899..179466921 | 21/23 | Sense | off-target | ttc37.L | |||
chr8S:29794972..29794994 | 21/23 | Antisense | off-target | col5a1.S | |||
chr1S:68393776..68393798 | 20/23 | Sense | off-target | btc.S | |||
chr6L:71408457..71408479 | 20/23 | Antisense | off-target | LOC108719059 | |||
chr1L:1915595..1915617 | 19/23 | Sense | off-target | ctnna2.L | |||
chr2S:119944122..119944144 | 19/23 | Sense | off-target | ankrd52.S | |||
chr1S:7681386..7681408 | 19/23 | Sense | off-target | LOC108706501 [provisional:ctnna2] | |||
chr5L:75716866..75716888 | 19/23 | Sense | off-target | LOC108716160 [provisional:gprc6a] | |||
chr5L:9037884..9037906 | 20/23 | unknown | |||||
chr7L:123399723..123399745 | 20/23 | unknown | |||||
chr8S:6528201..6528223 | 20/23 | unknown | |||||
Scaffold20389:353..375 | 19/23 | unknown | |||||
chr1S:86607458..86607480 | 19/23 | unknown | |||||
chr2S:139673468..139673490 | 19/23 | unknown | |||||
chr5L:37754164..37754186 | 19/23 | unknown | |||||
chr7S:30217917..30217939 | 19/23 | unknown | tropicalis 10.0 | Chr5:108318945..108318967 | 22/23 | Sense | fxr1 |
Chr1:58511030..58511052 | 20/23 | Antisense | znf827 | ||||
Chr9:49725024..49725046 | 19/23 | Sense | ccnyl1 | ||||
Chr1:127000230..127000252 | 20/23 | ||||||
Chr6:114240556..114240578 | 19/23 | ||||||
Publications | |||||||
???morpholino.displaySummary.papersFirst??? |
FXR1 splicing is important for muscle development and biomolecular condensates in muscle cells., J Cell Biol 2020 |
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???morpholino.displaySummary.papersRecent??? | |||||||
???morpholino.displaySummary.papersAll??? |