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XB-MORPHOLINO-17250306
Morpholino Name:
shroom2 MO1
Synonyms: Shroom2-SPL-MO
Target mRNA: shroom2
Morpholino Type: uncategorized morpholino
Sequence: 5' TACTACCATACACACCTTGACAAGT 3'
Source: Gene Tools LLC
Synonyms: Shroom2-SPL-MO
Target mRNA: shroom2
Morpholino Type: uncategorized morpholino
Sequence: 5' TACTACCATACACACCTTGACAAGT 3'
![Run BLAST on sequence](img/icons/rocket.gif)
Source: Gene Tools LLC
Target mRNA | laevis.L | ||||||
Identities | 25/25 | ||||||
genome
MO
|
5' ACTTGTCAAGGTGTGTATGGTAGTA 3' ||||||||||||||||||||||||| 3' TGAACAGTTCCACACATACCATCAT 5' |
||||||
Genomic Alignments ![]() |
Position | Identity | Strand | Target | Target mRNA | ||
laevis 10.1 | Chr2L:79702331..79702355 | 25/25 | Antisense | target | shroom2.L | ||
Chr4L:91162520..91162544 | 21/25 | Sense | off-target | faf1.L | |||
Chr4S:18786753..18786777 | 21/25 | Antisense | off-target | sbf2.S | |||
Chr6L:70306873..70306897 | 21/25 | Antisense | off-target | sdha.L | |||
Chr6L:9090286..9090310 | 21/25 | Sense | off-target | nktr.L | |||
Chr1L:98774460..98774484 | 21/25 | Sense | off-target | noa1.L | |||
Chr2L:61063617..61063641 | 21/25 | Antisense | off-target | pigv.S | |||
Chr2S:49770615..49770639 | 21/25 | Sense | off-target | bcor.S | |||
Chr3L:82766578..82766602 | 21/25 | Sense | off-target | cog5.L | |||
Chr3L:85827777..85827801 | 21/25 | Sense | off-target | pclo.L | |||
Chr3S:104846920..104846944 | 21/25 | Antisense | off-target | drd1.S | |||
Chr3S:15674687..15674711 | 21/25 | Sense | off-target | tcof1.S | |||
Chr4S:132673415..132673439 | 21/25 | Antisense | off-target | nisch.S | |||
Chr5S:128966390..128966414 | 21/25 | Antisense | off-target | cyria.S | |||
Chr7S:89351795..89351819 | 21/25 | Sense | off-target | megf6.S | |||
Chr8L:31007330..31007354 | 21/25 | Antisense | off-target | eda2r.L | |||
Chr1L:57016286..57016310 | 21/25 | Antisense | off-target | pdgfc.L | |||
Chr1L:19936980..19937004 | 21/25 | Sense | off-target | ctbp1.L | |||
Chr2L:105290297..105290321 | 21/25 | Antisense | off-target | p2rx1.L | |||
Chr8S:8344503..8344527 | 21/25 | Sense | off-target | kcnh5.S | |||
Chr9_10S:24806739..24806763 | 21/25 | Antisense | off-target | usp36.S | |||
Chr3S:55172172..55172196 | 21/25 | Antisense | off-target | chrna7.S | |||
Chr4L:116847279..116847303 | 21/25 | Sense | off-target | lrrc52.L | |||
Chr5S:29954432..29954456 | 21/25 | Antisense | off-target | anapc1.S | |||
Chr6S:13534496..13534520 | 21/25 | Antisense | off-target | adarb2.S | |||
Chr6S:3517547..3517571 | 21/25 | Antisense | off-target | cdc25a.S | |||
Chr8L:22528020..22528044 | 21/25 | Antisense | off-target | brinp1.L | |||
Chr2L:45573925..45573949 | 21/25 | Sense | off-target | ptchd1.L | |||
Chr8S:58499202..58499226 | 21/25 | Antisense | off-target | chrdl1.S | |||
Chr8S:58499546..58499570 | 21/25 | Sense | off-target | chrdl1.S | |||
Chr8S:58500312..58500336 | 21/25 | Sense | off-target | chrdl1.S | |||
Chr9_10L:20525714..20525738 | 21/25 | Antisense | off-target | kcnj16.L | |||
Chr9_10L:20526019..20526043 | 21/25 | Sense | off-target | kcnj16.L | |||
Chr9_10L:20526785..20526809 | 21/25 | Sense | off-target | kcnj16.L | |||
Chr6L:5703970..5703994 | 21/25 | Sense | off-target | smarcc1.L | |||
Chr1L:172426321..172426345 | 21/25 | Antisense | off-target | tmem132d.L | |||
Chr3S:65800870..65800894 | 21/25 | Sense | off-target | LOC108713037 | |||
Chr4L:99424500..99424524 | 21/25 | Sense | off-target | LOC121403070 | |||
Chr4S:90341318..90341342 | 21/25 | Sense | off-target | LOC108715697 | |||
Chr5S:40969121..40969145 | 21/25 | Sense | off-target | LOC108717837 | |||
Chr5S:84321794..84321818 | 21/25 | Sense | off-target | LOC108717438 | |||
Chr6S:121482895..121482919 | 21/25 | Antisense | off-target | LOC108719755 | |||
Chr7L:130328716..130328740 | 21/25 | Antisense | off-target | LOC108697061 | |||
Chr7L:70475020..70475044 | 21/25 | Antisense | off-target | LOC108696379 | |||
Chr7L:70475620..70475644 | 21/25 | Sense | off-target | LOC108696379 | |||
Chr8L:18333611..18333635 | 21/25 | Antisense | off-target | LOC121396887 | |||
Chr8L:60969797..60969821 | 21/25 | Antisense | off-target | LOC108698494 | |||
Chr8S:21031566..21031590 | 21/25 | Antisense | off-target | LOC108700484 | |||
Chr8S:41141052..41141076 | 21/25 | Sense | off-target | LOC108700024 | |||
Chr1L:208553254..208553278 | 21/25 | Antisense | off-target | LOC108718341 | |||
Chr1L:171091600..171091624 | 21/25 | Sense | off-target | LOC108716320 | |||
Chr2L:177681062..177681086 | 21/25 | Sense | off-target | LOC108707579 | |||
Chr2S:146678871..146678895 | 21/25 | Antisense | off-target | LOC108709955 | |||
Chr3L:153915105..153915129 | 21/25 | Antisense | off-target | LOC108710653 | |||
Chr9_10L:65119659..65119683 | 21/25 | Sense | off-target | LOC108701836 | |||
Chr3S:107905552..107905576 | 21/25 | Antisense | unknown | ||||
Chr3S:18695774..18695798 | 21/25 | Antisense | unknown | ||||
Chr3S:18695875..18695899 | 21/25 | Sense | unknown | ||||
Chr3S:26731212..26731236 | 21/25 | Antisense | unknown | ||||
Chr3S:87074767..87074791 | 21/25 | Sense | unknown | ||||
Chr3S:96147064..96147088 | 21/25 | Antisense | unknown | ||||
Chr4L:102444501..102444525 | 21/25 | Sense | unknown | ||||
Chr4L:92731179..92731203 | 21/25 | Sense | unknown | ||||
Chr4S:18170360..18170384 | 21/25 | Antisense | unknown | ||||
Chr4S:33138759..33138783 | 21/25 | Sense | unknown | ||||
Chr4S:33139525..33139549 | 21/25 | Sense | unknown | ||||
Chr4S:78911795..78911819 | 21/25 | Antisense | unknown | ||||
Chr4S:78912645..78912669 | 21/25 | Sense | unknown | ||||
Chr5L:113396519..113396543 | 21/25 | Sense | unknown | ||||
Chr5L:33384885..33384909 | 21/25 | Antisense | unknown | ||||
Chr5L:33385681..33385705 | 21/25 | Sense | unknown | ||||
Chr5L:3843138..3843162 | 21/25 | Sense | unknown | ||||
Chr5L:60918825..60918849 | 21/25 | Sense | unknown | ||||
Chr5L:60919590..60919614 | 21/25 | Sense | unknown | ||||
Chr5L:61210958..61210982 | 21/25 | Antisense | unknown | ||||
Chr5L:61211802..61211826 | 21/25 | Sense | unknown | ||||
Chr5L:67601750..67601774 | 21/25 | Sense | unknown | ||||
Chr5L:67602515..67602539 | 21/25 | Sense | unknown | ||||
Chr5L:73526863..73526887 | 21/25 | Sense | unknown | ||||
Chr5L:84219215..84219239 | 21/25 | Sense | unknown | ||||
Chr5S:124438249..124438273 | 21/25 | Sense | unknown | ||||
Chr5S:138657992..138658016 | 21/25 | Antisense | unknown | ||||
Chr5S:19553999..19554023 | 21/25 | Sense | unknown | ||||
Chr5S:37180075..37180099 | 21/25 | Antisense | unknown | ||||
Chr5S:37180254..37180278 | 21/25 | Sense | unknown | ||||
Chr5S:71596956..71596980 | 21/25 | Antisense | unknown | ||||
Chr5S:95065264..95065288 | 21/25 | Antisense | unknown | ||||
Chr5S:97052744..97052768 | 21/25 | Sense | unknown | ||||
Chr6L:104880308..104880332 | 21/25 | Sense | unknown | ||||
Chr6L:34015414..34015438 | 21/25 | Sense | unknown | ||||
Chr6S:115897629..115897653 | 21/25 | Sense | unknown | ||||
Chr6S:125204827..125204851 | 21/25 | Antisense | unknown | ||||
Chr6S:47666237..47666261 | 21/25 | Antisense | unknown | ||||
Chr6S:47667004..47667028 | 21/25 | Antisense | unknown | ||||
Chr6S:50104019..50104043 | 21/25 | Sense | unknown | ||||
Chr6S:77915985..77916009 | 21/25 | Antisense | unknown | ||||
Chr6S:79256721..79256745 | 21/25 | Sense | unknown | ||||
Chr6S:8373980..8374004 | 21/25 | Sense | unknown | ||||
Chr6S:88128317..88128341 | 21/25 | Sense | unknown | ||||
Chr7L:102570559..102570583 | 21/25 | Antisense | unknown | ||||
Chr7L:102570658..102570682 | 21/25 | Sense | unknown | ||||
Chr7L:128354417..128354441 | 21/25 | Antisense | unknown | ||||
Chr7L:128355091..128355115 | 21/25 | Sense | unknown | ||||
Chr7L:34869505..34869529 | 21/25 | Antisense | unknown | ||||
Chr7L:52217024..52217048 | 21/25 | Antisense | unknown | ||||
Chr7L:52231151..52231175 | 21/25 | Antisense | unknown | ||||
Chr7L:52232089..52232113 | 21/25 | Sense | unknown | ||||
Chr7L:56818517..56818541 | 21/25 | Sense | unknown | ||||
Chr7L:80014294..80014318 | 21/25 | Antisense | unknown | ||||
Chr7S:30575734..30575758 | 21/25 | Antisense | unknown | ||||
Chr7S:30576530..30576554 | 21/25 | Sense | unknown | ||||
Chr7S:82258564..82258588 | 21/25 | Antisense | unknown | ||||
Chr8L:109506269..109506293 | 21/25 | Antisense | unknown | ||||
Chr8L:120966988..120967012 | 21/25 | Antisense | unknown | ||||
Chr8L:120967765..120967789 | 21/25 | Sense | unknown | ||||
Chr8L:133188448..133188472 | 21/25 | Antisense | unknown | ||||
Chr8L:28061781..28061805 | 21/25 | Sense | unknown | ||||
Chr8L:95075406..95075430 | 21/25 | Sense | unknown | ||||
Chr8S:18947367..18947391 | 21/25 | Antisense | unknown | ||||
Chr8S:31140364..31140388 | 21/25 | Antisense | unknown | ||||
Chr8S:42651809..42651833 | 21/25 | Sense | unknown | ||||
Chr1L:2585300..2585324 | 21/25 | Antisense | unknown | ||||
Chr1L:2586067..2586091 | 21/25 | Sense | unknown | ||||
Chr1L:53953582..53953606 | 21/25 | Antisense | unknown | ||||
Chr1L:53954376..53954400 | 21/25 | Sense | unknown | ||||
Chr1L:54143424..54143448 | 21/25 | Sense | unknown | ||||
Chr1S:107322368..107322392 | 21/25 | Sense | unknown | ||||
Chr1L:133230497..133230521 | 21/25 | Antisense | unknown | ||||
Chr1L:143729686..143729710 | 21/25 | Antisense | unknown | ||||
Chr1L:143730218..143730242 | 21/25 | Sense | unknown | ||||
Chr1L:163681798..163681822 | 21/25 | Sense | unknown | ||||
Chr1L:178051925..178051949 | 21/25 | Sense | unknown | ||||
Chr1S:109859446..109859470 | 21/25 | Sense | unknown | ||||
Chr1S:137639621..137639645 | 21/25 | Sense | unknown | ||||
Chr1S:174791765..174791789 | 21/25 | Antisense | unknown | ||||
Chr1S:175112181..175112205 | 21/25 | Sense | unknown | ||||
Chr1S:190350070..190350094 | 21/25 | Sense | unknown | ||||
Chr1S:21075403..21075427 | 21/25 | Sense | unknown | ||||
Chr1S:24152175..24152199 | 21/25 | Sense | unknown | ||||
Chr1S:56833669..56833693 | 21/25 | Antisense | unknown | ||||
Chr2L:109276885..109276909 | 21/25 | Antisense | unknown | ||||
Chr2L:16057792..16057816 | 21/25 | Sense | unknown | ||||
Chr2L:179484703..179484727 | 21/25 | Sense | unknown | ||||
Chr2L:36787052..36787076 | 21/25 | Antisense | unknown | ||||
Chr2L:36787432..36787456 | 21/25 | Sense | unknown | ||||
Chr2L:88394987..88395011 | 21/25 | Antisense | unknown | ||||
Chr2L:88395589..88395613 | 21/25 | Sense | unknown | ||||
Chr2S:149227092..149227116 | 21/25 | Sense | unknown | ||||
Chr2S:164687983..164688007 | 21/25 | Sense | unknown | ||||
Chr2S:23315238..23315262 | 21/25 | Antisense | unknown | ||||
Chr2S:25767950..25767974 | 21/25 | Sense | unknown | ||||
Chr2S:66970768..66970792 | 21/25 | Antisense | unknown | ||||
Chr2S:77530160..77530184 | 21/25 | Sense | unknown | ||||
Chr3L:110313827..110313851 | 21/25 | Sense | unknown | ||||
Chr3L:160354616..160354640 | 21/25 | Sense | unknown | ||||
Chr3L:16770201..16770225 | 21/25 | Antisense | unknown | ||||
Chr3L:16770425..16770449 | 21/25 | Sense | unknown | ||||
Chr3L:42325996..42326020 | 21/25 | Antisense | unknown | ||||
Chr3L:42326357..42326381 | 21/25 | Sense | unknown | ||||
Chr3L:42327045..42327069 | 21/25 | Sense | unknown | ||||
Chr3L:59672832..59672856 | 21/25 | Antisense | unknown | ||||
Chr3L:75468282..75468306 | 21/25 | Sense | unknown | ||||
Chr8S:50584699..50584723 | 21/25 | Antisense | unknown | ||||
Chr8S:51477598..51477622 | 21/25 | Antisense | unknown | ||||
Chr8S:51588765..51588789 | 21/25 | Antisense | unknown | ||||
Chr8S:51589150..51589174 | 21/25 | Sense | unknown | ||||
Chr8S:55818912..55818936 | 21/25 | Antisense | unknown | ||||
Chr8S:74841202..74841226 | 21/25 | Antisense | unknown | ||||
Chr9_10L:108867610..108867634 | 21/25 | Sense | unknown | ||||
Chr9_10L:20839359..20839383 | 21/25 | Sense | unknown | ||||
Chr9_10L:26817510..26817534 | 21/25 | Antisense | unknown | ||||
Chr9_10L:37443810..37443834 | 21/25 | Sense | unknown | ||||
Chr9_10L:75127679..75127703 | 21/25 | Antisense | unknown | ||||
Chr9_10L:75128389..75128413 | 21/25 | Sense | unknown | ||||
Chr9_10S:34048106..34048130 | 21/25 | Sense | unknown | ||||
Chr9_10S:84862641..84862665 | 21/25 | Sense | unknown | ||||
Publications | |||||||
???morpholino.displaySummary.papersFirst??? |
Shroom2 (APXL) regulates melanosome biogenesis and localization in the retinal pigment epithelium., Development 2006 ![]() |
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???morpholino.displaySummary.papersRecent??? | |||||||
???morpholino.displaySummary.papersAll??? |