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Hereditas
2018 Feb 20;155:18. doi: 10.1186/s41065-018-0056-6.
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Comparative transcriptome reveal the potential adaptive evolutionary genes in Andrias davidianus.
Hu Q
,
Wang Q
,
Meng Y
,
Tian H
,
Xiao H
.
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To search the evidence of molecular evolution mechanism for aquatic and cave habitat in Andrias davidianus, the evolution analysis was carried out among several species transcriptome data. The transcriptome data of Notophthalmus viridescens, Xenopus tropicalis, Cynops pyrrhogaster, Hynobius chinensis and A. davidianus were obtained from the Genbank and reassembled except Xenopus tropicalis. The BLAST search of transcriptome data obtained 1244 single-copy orthologous genes among five species. A phylogenetic tree showed A. davidianus to have the closest relationship to H. chinensis. Fourteen positively selected genes were detected in A. davidianus and N. vridescens group and fifteen in A. davidianus and H. chinensis group. Five genes were shared in the both groups which involved in the immune system, suggesting that A. davidianus adaptation to an aquatic and cave environment required rapid evolution of the immune system compared to N. viridescens and H. chinensis.
Fig. 1. Venn diagrams showing the unigenes for comparative transcriptomes. The superscript indicates the protein family and the subscript indicates the unigenes
Fig. 2. Ka/Ks ratio of 1244 single-copy orthologous genes. a. Ka/Ks distribution in Andrias davidianus and Hynobius chinensis, b. Ka/Ks distribution in Andrias davidianus and Notophthalmus viridescens. The solid line shows the threshold of Ka/Ks = 1, the dashed line marked the weak positive selection threshold of Ka/Ks = 0.5, and the short dashed line represented threshold of Ka/Ks = 0.1
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