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J Mol Evol
1995 Dec 01;416:942-51. doi: 10.1007/bf00173174.
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The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss.
Zardoya R
,
Garrido-Pertierra A
,
Bautista JM
.
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The complete nucleotide sequence of the mitochondrial DNA of the rainbow trout, Onchorynchus mykiss, has been determined. The total length of the molecule is 16,660 bp. The rainbow trout mitochondrial DNA has the same organization described in eutherian mammals, the clawed frog (Xenopus laevis), and the two fish species, Oriental stream loach (Crossotoma lacustre) and carp (Cyprinus carpio). Alignment and comparison of the deduced amino acid sequences of the 13 proteins encoded by rainbow trout and other vertebrate mitochondrial genomes allowed us to estimate that COI is the most conserved mitochondrial subunit (amino acid identity ranging from 85.6% to 94.8%) whereas ATPase 8 is the most variable one (amino acid identity ranging from 30.8% to 70.4%). Putative secondary structures for the 22 tRNAs found in the molecule are given along with an extensive comparison of tRNA sequences among representative species of each major group of vertebrates. In this sense, an unusual cloverleaf structure for the tRNASer(AGY) is proposed. A stem-loop structure inferred for the origin of the L-strand replication (OL) and the presence of a large polycytidine tract in the OL loop is described. The existence of this stretch instead of the usual T-rich sequence reported so far in mammal mtDNAs is explained in terms of a less-strict template dependence of the RNA primase involved in the initiation of L-strand replication.
Anderson,
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Anderson,
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1981,
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Anderson,
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Arnason,
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1992,
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Arnason,
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Arnason,
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Attardi,
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1985,
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Attardi,
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1986,
Pubmed
Bibb,
Sequence and gene organization of mouse mitochondrial DNA.
1981,
Pubmed
Brown,
Rapid evolution of animal mitochondrial DNA.
1979,
Pubmed
Buroker,
Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model.
1990,
Pubmed
Chang,
The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome.
1994,
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Chomyn,
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,
Pubmed
Christianson,
A tridecamer DNA sequence supports human mitochondrial RNA 3'-end formation in vitro.
1988,
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Davidson,
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1988,
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Desjardins,
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1990,
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Devereux,
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1984,
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Digby,
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1992,
Pubmed
,
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Doda,
Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences.
1981,
Pubmed
Gadaleta,
The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: cryptic signals revealed by comparative analysis between vertebrates.
1989,
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Haffter,
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1992,
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Hixson,
Both the conserved stem-loop and divergent 5'-flanking sequences are required for initiation at the human mitochondrial origin of light-strand DNA replication.
1986,
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Hoffmann,
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1992,
Pubmed
Janke,
The marsupial mitochondrial genome and the evolution of placental mammals.
1994,
Pubmed
Johansen,
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1990,
Pubmed
,
Xenbase
Kumazawa,
Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics.
1993,
Pubmed
Montoya,
The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcription units.
1983,
Pubmed
Ojala,
A small polyadenylated RNA (7 S RNA), containing a putative ribosome attachment site, maps near the origin of human mitochondrial DNA replication.
1981,
Pubmed
Palva,
Rapid isolation of animal mitochondrial DNA by alkaline extraction.
1985,
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Roe,
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1985,
Pubmed
,
Xenbase
Sanger,
DNA sequencing with chain-terminating inhibitors.
1977,
Pubmed
Steinberg,
Structural compensation in atypical mitochondrial tRNAs.
1994,
Pubmed
Thomas,
Variation in salmonid mitochondrial DNA: evolutionary constraints and mechanisms of substitution.
1989,
Pubmed
,
Xenbase
Tzeng,
The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates.
1992,
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Wolstenholme,
Animal mitochondrial DNA: structure and evolution.
1992,
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Wong,
In vitro replication of human mitochondrial DNA: accurate initiation at the origin of light-strand synthesis.
1985,
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Xu,
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1994,
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