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EMBO J
1999 Mar 01;185:1387-96. doi: 10.1093/emboj/18.5.1387.
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Tight correlation between inhibition of DNA repair in vitro and transcription factor IIIA binding in a 5S ribosomal RNA gene.
Conconi A
,
Liu X
,
Koriazova L
,
Ackerman EJ
,
Smerdon MJ
.
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UV-induced photoproducts (cyclobutane pyrimidine dimers, CPDs) in DNA are removed by nucleotide excision repair (NER), and the presence of transcription factors on DNA can restrict the accessibility of NER enzymes. We have investigatigated the modulation of NER in a gene promoter using the Xenopus transcription factor IIIA (TFIIIA)-5S rDNA complex and Xenopus oocyte nuclear extracts. TFIIIA alters CPD formation primarily in the transcribed strand of the 50 bp internal control region (ICR) of 5S rDNA. During NER in vitro, CPD removal is reduced at most sites in both strands of the ICR when TFIIIA is bound. Efficient repair occurs just outside the TFIIIA-binding site (within 10 bp), and in the absence of 5S rRNA transcription. Interestingly, three CPD sites within the ICR [+56, +75 (transcribed strand) and +73 (non-transcribed strand)] are repaired rapidly when TFIIIA is bound, while CPDs within approximately 5 bases of these sites are repaired much more slowly. CPDs at these three sites may partially displace TFIIIA, thereby enabling rapid repair. However, TFIIIA is not completely displaced during NER, at least at sites outside the ICR, even though the NER complex could be sterically hindered by TFIIIA. Such inefficient repair of transcription factor binding sites could increase mutation frequency in regulatory regions of genes.
Aboussekhra,
Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae.
1998, Pubmed
Aboussekhra,
Nucleotide excision repair and photolyase preferentially repair the nontranscribed strand of RNA polymerase III-transcribed genes in Saccharomyces cerevisiae.
1998,
Pubmed
Birkenmeier,
A nuclear extract of Xenopus laevis oocytes that accurately transcribes 5S RNA genes.
1978,
Pubmed
,
Xenbase
Bogenhagen,
Stable transcription complexes of Xenopus 5S RNA genes: a means to maintain the differentiated state.
1982,
Pubmed
,
Xenbase
Bohr,
DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.
1985,
Pubmed
Brash,
UV mutagenic photoproducts in Escherichia coli and human cells: a molecular genetics perspective on human skin cancer.
1988,
Pubmed
Cadet,
Photochemistry of nucleic acids in cells.
1992,
Pubmed
Christians,
Lack of transcription-coupled repair in mammalian ribosomal RNA genes.
1993,
Pubmed
Dammann,
Lack of gene- and strand-specific DNA repair in RNA polymerase III-transcribed human tRNA genes.
1997,
Pubmed
Del Río,
High yield purification of active transcription factor IIIA expressed in E. coli.
1991,
Pubmed
,
Xenbase
Dodson,
Structure-function studies of the T4 endonuclease V repair enzyme.
1989,
Pubmed
Friedberg,
Relationships between DNA repair and transcription.
1996,
Pubmed
Fritz,
Repair of UV damage in actively transcribed ribosomal genes.
1995,
Pubmed
Fritz,
Strand breaks are repaired efficiently in human ribosomal genes.
1996,
Pubmed
Gaillard,
Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I.
1996,
Pubmed
,
Xenbase
Gao,
DNA repair rates mapped along the human PGK1 gene at nucleotide resolution.
1994,
Pubmed
Hanawalt,
Stranded in an active gene.
1993,
Pubmed
Hayes,
A protein-protein interaction is essential for stable complex formation on a 5 S RNA gene.
1989,
Pubmed
,
Xenbase
Hayes,
Structure of the TFIIIA-5 S DNA complex.
1992,
Pubmed
,
Xenbase
Jensen,
DNA repair within nucleosome cores of UV-irradiated human cells.
1990,
Pubmed
Kim,
Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity.
1995,
Pubmed
Liu,
Strand-specific modulation of UV photoproducts in 5S rDNA by TFIIIA binding and their effect on TFIIIA complex formation.
1997,
Pubmed
,
Xenbase
Mann,
DNA damage can alter the stability of nucleosomes: effects are dependent on damage type.
1997,
Pubmed
,
Xenbase
Mellon,
Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand.
1989,
Pubmed
Mitchell,
The biology of the (6-4) photoproduct.
1989,
Pubmed
Nolte,
Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex.
1998,
Pubmed
,
Xenbase
Oda,
DNA polymerases alpha and beta are required for DNA repair in an efficient nuclear extract from Xenopus oocytes.
1996,
Pubmed
,
Xenbase
Romaniuk,
Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5 S RNA gene.
1990,
Pubmed
,
Xenbase
Sancar,
DNA excision repair.
1996,
Pubmed
Saxena,
Excision repair of UV-damaged plasmid DNA in Xenopus oocytes is mediated by DNA polymerase alpha (and/or delta).
1990,
Pubmed
,
Xenbase
Selby,
Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro.
1990,
Pubmed
Selleck,
Photofootprinting in vivo detects transcription-dependent changes in yeast TATA boxes.
,
Pubmed
Smerdon,
Site-specific DNA repair at the nucleosome level in a yeast minichromosome.
1990,
Pubmed
Tommasi,
Inhibition of transcription factor binding by ultraviolet-induced pyrimidine dimers.
1996,
Pubmed
Tornaletti,
UV light as a footprinting agent: modulation of UV-induced DNA damage by transcription factors bound at the promoters of three human genes.
1995,
Pubmed
Tu,
DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site.
1996,
Pubmed
Verhage,
Repair of rDNA in Saccharomyces cerevisiae: RAD4-independent strand-specific nucleotide excision repair of RNA polymerase I transcribed genes.
1996,
Pubmed
Wang,
Selective visualization of gene structure with ultraviolet light.
1988,
Pubmed
,
Xenbase
Wolffe,
DNA replication in vitro erases a Xenopus 5S RNA gene transcription complex.
1986,
Pubmed
,
Xenbase
Wolffe,
The role of transcription factors, chromatin structure and DNA replication in 5 S RNA gene regulation.
1994,
Pubmed
,
Xenbase
Wolffe,
Transcription fraction TFIIIC can regulate differential Xenopus 5S RNA gene transcription in vitro.
1988,
Pubmed
,
Xenbase
Wolffe,
A bacteriophage RNA polymerase transcribes through a Xenopus 5S RNA gene transcription complex without disrupting it.
1986,
Pubmed
,
Xenbase