Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
JBrowse2 Tracks
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041575685.1 PREDICTED: Xenopus laevis cytoplasmic linker associated protein 1 L homeolog (clasp1.L), transcript variant X3, mRNA GGGGTTGGCGAGTTTGCGCAGTGGTGCTTCTTTTGAGCAGAAAGAGCAGCCGGGGCGGGGAGTCGGAGCC AGACGGGAGAAACAGGAGCGATGCACCGGGGCCTGGAGCGGCGGAACAGCCGGCAGCCTTAGTGTAAGAA GCGGCATTACCGGTACCCACACGGCACAGCTTTCCCCAGGGCGTCCTGCAGAACTATGTACCTCTGGACC GGCGACTTAACATTACAGTGCCTCTTGCCCTGCTTGCTGCACGTTTAAATCAGCCTTTTTATATCCGAGC AGCTGCTCTGCAGACACATGCTGGATTGTTCTCATTCCCAGGATTGCATCTTTGAAGGCCGAACCCTCTT CAGCTTTTTGGCAACAAGAGAAGACCACGTTGGTGCATTCACTTGAAAGATTGGTGACCTTCTGCCCTCT ACATTGCCTCCTTTCCTAGTCGGTGCTGGCCCACTCCCTAGCTATGGAACAGGGAATGGACTACTGGCTG GGGCAGATACAGCAGAAAGATGTGGGCAAGAGGCTCCAGGTTGGACCCGACTTGATAGAATACTTGTTGG ATAGACAGAAGTCCATAGACCTGGAACAGGACCAGACTCTGCTCGACAGAATGGTCGATGGACTTGCCAC TTCCTGGGTGAATTCTAGTAATTATAAGGTGGCCCTGCTGGGCATGGATATTCTGTCCGAACTTGTTTCC CGGCTGCAGGATCGATTCAGAACACAGCTTGGCACAGTGTTACCAAGTTTGATGGACCGATTAGGGGATG CCAAGGACTCTGTACGAGAGCAAGACCAGAGCCTCCTGATAAAGATAATGGAACAGGCCTCCAACCCACA GTATGTGTGGGAACGGATGTTTTCGGGATTCAAACATAAGAATTTCCGTACGCGGGAAGGAGTCTGCCTC TGCCTTATTGCCACCCTCAATGTGTATGGAGCCAACAGTCTGACACTTAGTAAGATTGTACCGCATATAT GTAACCTTCTGGGGGATCCTAATAGCCAGGTCCGAGATGCTGCAATAAATTGCCTCGTAGAGATCTACAG ACATGTAGGGGAACGCGTCCGAGCTGATCTCAGTAAGAAAGGGCTGCCACAATCACGACTGAATGTAATT TTCACCAAATTCGATGAGGTACAGAAATCGGGAACCATGATCCTCTCCGCATCCGATAAAAACTTTGATG ATGAAGATTCTGTTGATGGCAACCGACCCTCATCGGCCAGTTCTTCTGCCTCTTCTAAAGCCCCTCAAAC CGCCCGCAGAGGGGTGAGCTTAGGGACTGCCCGCAGGCCAGGACCCTCTAGTGCTGCAGCCAAGACAGGA GGAACTGCCAAAGAAGGCGCGGGAGCCTTGGATGAGGAGGATTTTATTCGAGCATTTGAAGATGTTCCGA ATGTCCAGATATATTCAAGCAGAGACCTGGAGGAGTCCTTGAACAAGATCCGAGAAATCCTCTCTGATGA CAAACATGACTGGGAGCAGCGGATCACTGCTCTGAAGAAGATCCGATCTTTGCTTTTGGCGGGGGCGGCA GAATATGATAATTTCTTCCAGCAGCTCCGTCTGCTTGATGGAGCCTTTAAACTCTCTGCCAAGGACTTGC GTTCTCAGGTTGTACGGGAGGCTTGTATCACTCTGGGACACTTATCCTCAGTTCTGGGGAATAAATTTGA CCATGGTGCAGAAGCAATCATGCCAACGGTCTTCAATCTGGTCCCCAACAGTGCCAAAATCATGGCCACC TCTGGCATTGTAGCCATCCGGCTAATCATACGTCATACACACGTCCCAAGGTTGATCCCCATCATCACCA GTAACTGCACCTCCAAGTCTGTCGCTGTCAGAAGACGCTGCTACGATTTTTTGGATCTGCTTCTCCAAGA ATGGCAAACTCACTCACTCGAAAGGCACGTATCTGTGTTAGCAGAGACCATCAAAAAGGGGATTCATGAT GCGGATTCAGAAGCAAAGATCGTCGCAAGAAAGTGCTACTGGGGGTTCCACAGTCATTTCAGTAAGGAGG CAGAGCACTTGTTCCATACACTGGAGTCTTCCTACCAGAAAGCCCTGCAGTCTCATCTGAAGAACTCTGA CAGTATCGTCTCTTTGCCCCAGTCTGACCGATCCTCCTCCAGTTCCCAGGAGAGCCTCAACCGACCACTT TCGACTAAAAGAAGCCCCACAGGCAGCACTGTGTCTAGAGCATCGTCAGCTACTTCCAAATCCACCCCCG GGTCCCTGCAGCGCTCTCGTAGTGACATTGATGTGAACGCAGCGGCCACTTCTAAATCTAAGGCAGCATC AGGAGCCTCCACTGCTCCATTCATTTCTGTTGCCGCACTGCCACCTGGATCCTATGCGTCACTGGATGGT ACCACATCTAAATCGGATGGCCGTATTCGCACTAGAAGGCAGAGTTCCGGCAGCACCACCAGCACGGCCT CTACCCCAGCAGACACCCGTGGACGCAGCCGAGCCAAAGTCGTGTCACAGTCACAGCGATCCAGATCGGC AAATCCTGCCAGTGCTGGAAGCCGGTCCAACTCGCCAGGAAAGCTCCTGGGGAGTAGCTATGGTGGGATA GCGACTGGCCCACAGAGGGTCCCCCAGATGCCCTCCTCTGAAAAGAGAAGCAGGATCCCCCGGAGCCAGG GGTGCAGCAGGGAGACCAGCCCAAGCAGGATTGGCTTAGCAAGGAGCAGCCGTATCCCCCGACCCAGCAT GAGTCAGGGGTGCAGCCGCGATACCAGCCGGGAAAGCAGCCGCGATACCAGTCCTGCCCGGGGCTTTGCT CCTCTGGCCTCTCGACGTCATTCCAGGTCCACTAGCGCCCTCTCCACCTCCGACTCTGTGGGGCAGTCAG ATCGTTTTGGGATCAGCCAACAAGGAAGAATCCCTTCGGCAATGCGTGTCCTGAGTTCCAGCACAGATCT GGAGGCAGCTGTTGCAGATGCTCTGTTGCTGGGAGATTCCAGGAATAAGAAGAAGCCAGTTCGGAGGCGT TATGAGCCATACGGCATGTACTCTGATGATGATGCCAATAGTGACGCATCAAGCGCTTGCTCAGAGAGGT CCTACAGCTCCAAGAATGGTGGGATCCCTCACTACCTGCGCCAGACAGAAGATGTGGCTGAGGTGCTGAA TCATTGCGCCAGCTCCAACTGGTCTGAGAGAAAGGAAGGGCTCCTTGGACTGCAGAACCTGCTCAAGAGC CAGAGGACGCTGAGCCGAGTGGAACTGAAAAGGCTCTGCGAGATCTTCACCCGGATGTTTGCGGATCCTC ACAGCAAGGTGTTCAGCATGTTCCTGGAGACCCTTGTGGACTTTGTCATTATTCACAAAGATGACCTGCA GGACTGGCTCTTTATCCTCCTGACCCAGCTGCTGAAGAAAATGGGTGCCGACCTGCTGGGCTCTGTCCAA GCCAAAGTGCAGAAGGCACTGGATGTGACAAGGGATTCTTTCCCCTTTGACCAGCAGTTTAACATCCTGA TGAGATTCATAGTGGATCAGACCCAGACTCCCAACCTCAAGGTGAAAGTTGCCATACTGAAGTACATTGA GTCATTGGCCCGGCAGATGGACCCAACAGACTTTGTCAACTCCAGTGAGACACGTCTGGCTGTGTCCAGA ATCATCACTTGGACAACTGAGCCAAAGAGTTCTGATGTCAGGAAGGCGGCGCAGATTGTCTTAATCTCTC TGTTTGAGCTGAACACCCCAGAGTTCACCATGTTGCTGGGAGCCCTACCCAAAACCTTCCAAGATGGAGC CACAAAACTCCTGCACAACCACCTCAAGAACTCAAGTAACAGTAGCATGGGATCCCCAAGCAACACCATT GGCCGAACTCCTTCCAGACACTCCAGCAGCCGAGCCAGTCCACTAACATCGCCCACCAACTGTTCCCATG GCGGCCTCTCTCCCAGCATGCTGGATTATGACACTGAAAACCTGAACTCTGATGAAATCTACAGCTCCCT CCGAGGGGTGACAGAGGCCATCGAGAAGTTCAGCTTCCGCAGCCAAGTGGATCTCAATGAGCCTGTGAGA CGGGACAGCAAAAAGGAAAGCGAGCTGGGGTCCTGTGATGTTGGTATCGCTTCTCCAGCCAGCGATCTCC GTGGGGGCACAGACATGGTGGAAGGAGGTAGAATGGCACTTGATAACAAGACTTCCCTGCTGAATACGCA GCCGCCACGGGCATTCACAGGGCCCCGTGGGCGGGAATACAACCCTTATGCCTATTCCGACTCTATTAAC AGCTACGATAAGACAGCGCTAAAGGAAGCCGTGTTTGATGATGACATGGATCAGCTGCGTGATGTGTCCA TAGACCACTCAGACCTCGTGGCCGACCTCCTCAAAGAGCTGTCCAATCACAACGAGCGGGTTGAGGAGAG GAAAGGGGCCCTTTGTGAGCTGCTGAAGATCACGAGAGAAGACAACCTGGCTGTTTGGGAGGAACATTTC AAGACAATTCTGCTCCTCCTGCTGGAAACTCTGGGTGACAAAGATCATGCAATTCGCGCCTTAGCATTGA GGGTACTAAGAGAAATCCTGCGTAACCAACCGGCCCGGTTTAAGAATTATGCTGAGCTGACCATAATGAA GACACTGGAAGCCCATAAGGACTCTCATAAAGAGGTCGTCCGAGCTGCAGAAGAAGCAGCATCAACTCTG GCCGGGTCCATCCACCCCGAGCAGTGCATCAAAGTTCTGTGCCCCATCATCCAGACAGCTGACTACCCCA TCAACCTCGCTGCCATCAAAATGCAAGCAAAGGTCATTGAGAGGATTTCCAAGGAGTCCCTGCACCAGAT CCTCCCGGATATCATTCCAGGCTTGTTACAGGGCTATGATAATACAGAGAGCAGCGTTCGCAAGGCAAGT GTCTTCTGCCTGGTAGCCATCTATTCTGTGATTGGAGAAGAGCTGAAACCATACCTGGCGCAACTGACTG GCAGTAAGATGAAGCTGCTGAACCTGTATATAAAAAGAGCGCAGACAACAAACAGTAACAGCAGCTCCTC GTCGGACGTCTCCACGCACAGTTAGAGATGGTGCTGACGGCAGAATTGCTTTTCAAGATGGGTGGAGAGG AGGGAGCACCTGCACCTCCCGTGTGCACTGGTTTTGCTCAGCGGTTCACCATCGCATACCTTTAACACTA AGAAAATTCACATCTTTAACGCTGGAGAGGCATAGTGATTGTGGGTGCCCAAGGTTGAACTGCTCACTCT GGGGTCTTCTGATTAAGGGCCCGGCAAGCTTTAGGGTAACTCCGTGCTCAGCAGTGCCTCCATCTTTCCT CTCCACAGCTCAGCCTCCTCATATCTCATGCAATCAGTATTTCATTTTAAACGTTTGAATTTTCTTTTCT TTTTTGGATGGGGGAGGGGGGATTGAATGTAAAAGGGGGCGCAGATTTTGCCTTGGCCCCTGTGAGGCAA AGATGAAAAGCAGAAAAATGTGGCATGGTGACCCGCAGGGGCTATGATTGGCATCACAGGCAGTCTATGT TTTGCACGCTGCATCCATTTGTTTTGCGGTTTTATGTTGTAAATATTAAGAGAAATTATTTTACAGCTCC CGGCAACCCCATTGGATTTCTTTTAGGGCCAGATTATTCAGTATTTGTCTCTGGCCAATCAAATCACTCT GTGCGTTTTTGATTGATTTCTCAGCTGGGGTTAAATTGTTCTCAGTGGAACAATTCACAAATGGACCTGA TGTTGGGGGTTGGCAGTACTGTGAAGCGGGATATGGTTAATGTTCCTCTGCTACATGGCGCCACATCCGC GCCGCCATTTTTAAATTCTGTAAATGTATTTATTTGGCATTGTTGCTTTTAACCTGTCCCAGTGACCTGA ACTCTCCTTTGCCTCCCTGCTGGGCACTGTGGCCACTACGTCTGCCCTCTCACACACTCCCCTCTGTCCC CCCCAGGGAAACAATTATGAGTGAACCCTTGTTATGGCTTGTGCAGTTTCTGTGCCAGAAGCGGAGGGTG GCAGACTGACATCACCAACCCACGGGGCATTTTGCAGCCAATAAATAACTATGAAAAAACAGCAATCGTT TTTTGCTCTTTGTTCTCTGAGCAAATACACCATATGCTGTCTTTAATGAAACCACTCCCAGGAGCCCCAT GTACTCCTTGGTGCCTCGTTTCTGCCTGCCCTTTTCCCATTGGTTAATAGCATGAAATAACATCCTATAG GAATGAAATGACAGGATTTTATATGATTTTATAATAGTAGGAAGCAAATTCACCCATCACTGAGCAGATC TGCAGCCACTTCCCCTCAATGGCCCATTCTGACTTCTAGAAACCAATGTCGGACTCAATATTCTTATCAG GTCACCACTGAGCAGATTATCCAGCGTCCCAGCAAAAACTGCCCCCCCATCCCACTATTTTTAGTATTCC AAATGTTGGGTCCGGTACTGAATCCTAGAACTTTTCCCATCAAAACTCTATGATCCAGGCCCCAGTGGTT ATTCTGCAGGTCAGGAAGCAATTGTATCAGAAATAAATTGGTATGATCAGCTCCCCCCCACCCAGCTATA TAAGCCTTTGCGACCCCCGGTAGCATATGGATTTCATTGGACTCATTATGTGCTTCAGTAATCGTCTCTG CAAACAGGAGAGGGACCCATAGTTTGTTCGTATTGGCTGCCCTTGGACTTCTACCCAACCCCCATAATTT ATCATAGCTTTATGGACTCTGAGAGGGAAATCCTTATTCTTTAACTGGGACATTTATTTCCTTCATTCAA ACCCTATGCCCCCCCCCAAGGCTCTGATAGTGACAAAGTGGCACCGGCTCCCTCCAGCTGATAAAAGCTC AAGTGCACTGGGTTAGAGCTGATTGGTGTTCAGCAAGCCACGCCCAGTCTATATGGCTGAAAGAGACTGT ACTTCTCTTCCTGAAGGGCTCTCTAGTCTCTCTACAGTCTCGCTGCTCTCTATGGTCTAATGAACAAATT GATACAGACTCCTTGATAATCGGCAAAGAGAAATTTGTTTCTGCTGATGGAAAAATATATTCTACATTAA CAGAAGGGAACATGTTCACTATCCTCCCCTGCAGTCTCCATGCAGTGTACCTGGGACAGGGCACCCTATG GAAGGCACACCTCACCCCTCTCATGTACTGTAGTAACTAAATATTGCAGTACTATGAAAGCATGAGGATC TCTCCTCAACATGTGTGTTGGTTGCTTGGAGTCAGGATGAGAGCCTTGTTTATACTGGCTACTAACAACT GCTTGACAGACATGTTTATTTGCAGCCGAATTCTCTTCCATTGGTTCATCACTGCTGGCCAATAGGCAGC CTGCAATCTTTAAAAGCCAAGATGGGGGGAGACTTGTAAAACATTCAACTGATGAAGTTCTGGAAATAAA GGGTCAATGTGTAGACTTTTTTTTTTTAATCCCCCGTCTTTTCTTTTTGCTTTTTTCATGCTTCATATCT CGCTGTATTTATATCCTGATTGACTTTTCCGTGTATCATGGCAATTGTACAGACTTTCCTTTCAGTTAGT TTTGTTGCGTTAACCTGTATGTGATAGAATTTGCTAAAGAAAATTAATTGAAAAATGAGAAAAAAACGAC CCTGAGTTTTGCTTTAGAATAAATTAAATTTATGTTTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds