Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XP_041446640.1 LOW QUALITY PROTEIN: hemicentin-1 [Xenopus laevis] MFPCRILFLQHPLLLLLVQLLIQNSYGLTEPETANIPDGASTLAFVFDVTGSMYDDLVQVIEGASKILET SLNRPKKPLYNFALVPFHDPEIGPVTITTDPEKFQNELKELYVQGGGDCPEMSVGAIKIALEISLPGSFV YVFTDARSKDYQLTNEVLQLIQQKQSQVVFVLTGDCDDRSHHGYKVYEEIASTSSGQVFHLDKKQVNEVL KWVEEAVQASKVHLISTDHPGGASNTWEIPFDPSLKEVTVSLSGPSPAIELYDPSGKKMTPETGLNELLN IFNSAKVINIKEPVPGMWKIKTSSNGRHSVRITGVSTIDFRAGFSNKPTLDFSKTSSRPIQGIPTYILLN TKGLSYPARVERLELLTTSGSLLKTLPIKYYPDRTPYEIWNVTEFVPPNDTFFIKVIGYDKDDYLFQRVS SVSFSNIIPGAPKVSMPKITPGYYLQSGSVPCFVESLIPVTVRFSKNGVKLGNDQKFRESVNASWEIANV SVSDEGYYECYASSSAGSAHAQTFLDVNEPPPVIKVPTNVTVTVGKGAILTCNVVSTVRFNFTWLRNNID LKDMNPSRISILRNNSLEVKSVTIDDGGEYNCFASNEGGIATASVTLIVQDPPKAVLEPRNVTFTKGAEI KLKCSVTGYPTPHIIWMHNDMFVRFSNRYIITHDGTFIIKNAVERDSGVYKCLATNAAGTDQQTSVLVYI EVPQVTAVRSEMLVPVGSETTLACKATGIPRPLIHWYKENIKLSPSALITIDPLLGTLKMKNTQFSDAGP YICVAVNEAGKSNGKVSLRVGSSPVFTQTPADVSMDIGSVVSLSCSAEGIPEPKIKWRRLNHTSESSKPL SYQYNSQQKVGTLHINKLWVGDEGNYICEAENQFGKIHSQATITVTGLVVPVIGESPSVVSVIEGNQFTL PCVLLAGNPLPERHWVKDNVVLVSNPYISLRVDGSLHLERVLLKDGGDYLCTAKNVAGTADRITTIDVHV SPVIQHGPQIFSTIEGIAVSLPCKASGVPNPTIIWKKKGEVVVPNNDTIIAESDGTLHLSSPGGEDSGEY SCTAINAAGYAARKVQLTVYVKPRIVIPEANGSSIAQNNQIEISVRAGDDAILPCEVKSVPPPFITWAKE TQLISPFSQRHSILPSGSMKIFETKVSDAGMYTCVGTNLAGNITQLVKLSVYVPPKIQRGPKLIRVKLGH SFEIACINHGIPPPTTAWYKDGNIMELDYGQDNNIYRAESAKLSDGGTYTCVASNIIGKDSANATVEIYA PPTLSDLEPPYNKQNQERISRQQISFPCPVKGHPKPSIKWFRNGKELTGSEPGVNILEDRTILLIDSLTP YDNGEYTCVASNEAGQTEKKYSLKVHDPPLIKDKDTIANVSVLLNQVSTLLCEASGSPSPLITWYKGKTQ VVVSATVQILEKGKILKILKTTMKDSGHYTCKANNVAGESEKQYFVDVLDPPTIAGVGTISEVSVIAGRE VNLQCKVKGIPFPSIQWFKENRLLSTEDHNVIMLENGQVLHIKNSRLSDSGQYKCIAANAAGSQAKESRL TVYIAPTIKDGNSTADLSFTVNGEINLECDARGIPPPTITWYKDGEPLLPGTYVTYIQKGKYLRITESQI TDGGMYTCSVANVAGQTEKTYSVDIYVPARIDGDEKKHQNKKVIVGKSLTLECEATGHPQPLITWLKDGV PVETNDNIRLLYNGKKLEIKNIVEFDRGLYTCVAVNVAGETEIKYKVSVLVPPSIEGGNDPGDHTVIASG PVELECLASGTPLPTVMWLKNGTPINTSGRLRLQSNGQKLLIPSTESSDSGNYQCVVKNEAGSSTKQFNV IIHVRPTIKQVAPTVSVLMHKATTLQCIASGIPNPHITWLKDGLPFNVAKANVKMESFGRSLQFKKTLLE DAGKYTCVATNAAGEAEQTIWLNVYEPPKIENSGEVIQETVLANHDIILECKATGNPEPVVTWFKDNQQL ANTGDISLSDRGQVLQISGAQVFHAGIYRCVASSIAGTAELSYNLQVHVPPSISGRSSSVTVIVNNIVRL ECEATGFPVPSLTWLKDGSPVSSFANGIQILSGGRVLALTNAQVGDAGKYTCVAVNAAGEQQTDYDLSVY VPPNIMGEQQNISSLISETLILKCESDAIPPPVLTWYKDWKPLVTRPGLTISEDGSILKIEGAQVKDTGR YSCEAVNIAGKTEKNFNVNIMVPPAIRDSAEESEINVIEGTLISLLCDSTGIPPPALTWKKDDIAVQSGA AGHIRLLSGGRQLQIISARKSDAASYTCTASNSVGSAIKKYNVKVYVRPSISEGGSVPSEIVVIQGNNVT LDCEASGDPQPMLTWLKEGIPLISGNGFTISSNGRRLHLQKAQISNAGLYVCVAVNVAGQSDRKYDLKVF VPPAFPEGILKHENISIVEKNPFTLTCQVSGIPPPKVTWYKDGQPIPPSRSPQIMSGGFLLRFSHSSLSD AGRYTCAVSNAAGEDMRSFEVNVLVPPKIIGSVLEEIKVKERGNITLSCEATGTPVPQITWLKDGHPILE DTNHHIDHKGQWLQISNVIMADSGRYVCVASNPAGERSRSFSLGVLISPTIKGTINGSPEDVKVVLFSSI SLECEVHSHPPATITWHKDGRPFKMKNNVRILPGGRTLQILKAQEDDAGRYSCIATNEAGEGTHQYNLNV HIPPKIRKDDISEFGGFSKEIKAIVNTNFTLICDVKANPSAKITWYKDGQPLEPANNLAIISGNTLSVEK AQLSDTGRYTCLASNIAGEDELDFDVTIQVPPNFPKLSGLWTTSRSSTGSHNGENKEVIINNPISLYCET NAVPPPTITWYKDDKPLTPSNRAFILPGGHILQIARAQENDAGTYTCVAVNEAGKDSMHYVMQXPPAFEG SDEDLSKDITSLVNETLEMDCTVSVTGSPAPTISWLKDGHPIQEGTRYHFLSNGRTLKILYTQLMDTGRY ACVVENPAGSVQKFFNLNIYVPPSVIGSHSKNITVVEGNFISLTCEVTGFPPPAISWLKDRTVLNSDSHL FIVPGGRTLQIPQTRLSDVGEYSCIAINQAGEAKKTFFLDIYAPPSIVANIRDSSTEVNIKVNASAILEC ESNAIPAPVINWLKNGQPIRETSSYQFLEGGQRLNIRNTQVFDTGEYECIVTNVVGQDNKKFFLNVYVHP SIQGLQNEYHNGIIQSSVAFSCDAYGIPVPTLRWLKDGHPIGLTDSLEIQILSGGSKMKIARAQLTDGGT YTCLASNVEGTAEKNYMLTIQVPPSIDGSGMTNELNVLPGETIQLICNANGIPTPVIHWLKDGKHITIED YLGINITTDGEILTISPIQTSDMGKYTCVATNSAGEDDRIYNVNVFVAPTIDYNKGTPDVLTAVLDTSIN VECRATGFPNPQINWLKNGLPLPVSSQVRLQSGGQVLRFSRVQKSDAATYTCIASNRAGVDRKDYNMQVY VSPSLDEADVTQQITVISGDPAIMRCIANGVPAPTITWLKDGKQLGDEYLPYIQSQGMVLHIVKAKMDDI ARYTCVASNAAGRVSKHFILNVMEPPHINGSEVTEELSVVVNTQLDLLCYTSGFPPPLITWLKDGQPLSQ NDNMNLMKGGQVLRITSAQEENVGRYVCLASNHAGDTKKEFLVKVHTPPNIAGVSGTHNITVLQKKQITM ECKSDALPPPKMTWLKDGQPLLPSSTVHILSNGQHVQIDNTDVTDTGRYICIATNIAGKTTKEFVLNVQV PPSILEGPSLVTAYVNEPVTLECITSGVPLPKTAWRKDGSLLSRHNTRFFISENGSLYIPSVNVADIGQY FCLATNAAGSSQRQINLLVYDPPTINSEPTNITAKINIQTTLPCEVTGTPKPKIQWKKNGQLINTDLNQN MYRLLSSGSLVIISPTVDDTGMYICSALNDAGDDNIEMYLSVHVPPTIADEAANIFVTKLSTAVIPCTVS GVPFPSVHWLKDGIHLPAKSDSYRRLSSGSLEIPSSSLSHAGKYTCKAVNQVGSAQIQVNLYVQEVPLIK EQNDYLEVVFSNSITLSCEASGTPTPTISWQKEGVGVKSGSSYTILSSGNLNIARATQEDAGTYTCIAQN PAGTALKKIRLKVHVPPVIVPHQKEYVISMDKSITMICEAHGSPIPEMIWHKDGVPLAKSPGQRMSATGG LHIAVVQQDDAGQYTCTAENIAGSVSSSMNLSVLVPPRIVKNIKDVFVVINNQATLPCAAHGIPTPTISW AKNNVPITDKAGKYSVLASGELILHNAQHKDVGTYTCTANNVIGEDTHTVRLTAHFPPSFTELPTTVSLN EGERLSLLCKATGNPLPHTTWIFKDKILPVQDRRSKPQSELVIDKVSREYSGTYMCVAENIVASINTTIH VFVKEPPVLNGVHDTHRTVPLGGNIILNCVVKGNPSPKIQWHKKAKVISYNKHIKQFSNGSIAIYDAGHE DVGDYTCIATNDAGSLEHTVFLTLQRPPIIKVLPLDTTVDAGATVALNCQAEGEPVPKITWYRHNNPISS ENRINVLPNNSLQIVAAHQEDTSVYECKATNIMGTDAVKVTFTVQVHGGFSEWLPWQSCSVTCGQGIQRR IRLCDNPLPANGGHYCQGAETETRSCQNKLCPVDGNWSAWSTWEDCSRSCGSGKRTRIRTCSDPPAQEGG KPCIGKAVDVAVCNTKPCPVHGTWGPWQSWGACTKTCGKGTKTRVRFCNNPAPSPDGLPCEGQDTQMQIC GDRHCPVDGKWAAWSSWTSCSLSCGGGLRQRSRACSNPAPQYGGHKCEGNERENEICNADLCPVHGNWGL WSHWGSCSRTCNGGQMRRYRACDNPAPSHSGRACTGTDTETNKCNTDLCSAHGNWGQWEAWSKCSVSCGG GEQIRTRLCHHPARSHTGRPCPGDSTQLLRCNVQACPGGPQRVKGNLFGSINDLDFGISPLNATITDDPN SGSRILQAKFTNIPKSLGPSMRNLVSVLNPIYWTTAKEIGEAVNGFSLTGGIFKRESQVEFATGEILKIT HTARGVDSDGSLLLDTVVKGHVLQLQASADIHLKDYTEDYVQTGPGQVHAYSTRMFSLDGAYVPYTWNHI INYDPGQGTMPFLTETLHVSSIETDYKPQEESLSFQVHSSISRGDSSAQCPSGFRLDSSGLYCADEDECA SSSPCSHSCHNNIGSYYCSCPRGLMISDDGRTCHDIDECALEDSICRKNQECKNTVGSYICTIKCGVGFR AAANDLVCQDINECVESSPCHQRCLNSIGSYHCGCDKGYQLKGRRCIDLNECRHAVCRQDQLCKNTRGSY KCIDVCPIGLMRAENGTCVDINECQDGNHLCKNNQICENTLGGYLCTCPRGYKSEGAGSPCVDINECEKG DVCQHECRNVLGSYKCLCPPGYQLMANGKTCQDIDECLEQNIQCGINRMCFNMRGSHQCIDTPCPPNYIR DTISGYCLKNCAPNDLECALSPYALQYKLVSLPFGIAANQDLIRLVAYTEDGILHPRTTFLITDDYSSLP FSIREENMKGVVFTNRPLQKPETYRMKVKALSYSIDRTIEYQTAFIVYIAVSPYPY
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds