Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041564673.1 PREDICTED: Xenopus laevis collagen, type XII, alpha 1 S homeolog (col12a1.S), transcript variant X3, mRNA GAGAGACTCTTCCCACTTGAAAGGAGACAGTCTGTGAGGAAGGAGCATCAGGTTGGAAGCCACCAAGTGG ACAGTCAGCGCATCGCTCCTCTCATCCTCTTTCCCAGGGGCAGGGGTGCAAGGTGGGAGCAGCAACTTGG AATCCAGATCCATTCATGTTGTTGTGACCAGAGAAAAGCAGAAAAATGAAAATTCGGCTGTGCTCAGCAG TGACAGTATTTTGTGCTGTGCTGCTTCTATCTTCGATAGAGGCTGAAGGCCTGGAATGCAAAACTAAAGC TGCTGCTGATATAGTGTTGCTGGTGGATGGCTCTTGGAGTATCGGCCGCCCAAATTTTAGGACCGTCAGG AGTTTTATAGCACGGCTGGTTGAAGTCTTTGATATTGGCCCAGATAGAGTACAGATTGCTTTGGCCCAGT ACAGTGGGGATCCTCGAACCGAATGGCAACTGAAAAAGCATAGCACCAAGAAGTCTTTGTTGGAGGCAGT TGCAAACCTGCCTTACAAGGGTGGTAACACTCTTACAGGCATGGCTCTGAACTTCATCTTAAAAAATAAC TTCAACGCAGAGGCTGGTATGAGAACAAAGTCAAAAAAAATTGGTGTCGTAATCACTGATGGAAAATCTC AAGATGACATTGTTGTACCGTCCAAAAATCTACGGGACCAGGGAATAGAATTATATGCAGTTGGTATCAA AAATGCGGATGAAAATGAACTGAAGTTAATCGGCTCAGATCCAGATGAGATTTACGTATATAACGTTGCT GATTTTTCTTTACTTGTCAATATTGTGGATGACCTCACTAACAATCTATGTAACAGTGTGAAAGGCTCAG GAAATGATGTGGAGCCACCCTCTGACCTAGTTACATCAGAGCCTACACCACGGACCTTTAGAGTCACATG GAATCCACCCTCTCACAGTGTTGACCGATTTAGGGTGGAATATTATCCAGTGTCTGGTGGCCGACCAATG GAGGTTTTTGCTGGCAGATCAGATAGAACTACAGTTTTGACTAATTTAAAACCAGAAACAGAGTATGTTG TGAAAGTGTATTCTGTGTTAGAGGGAGAAAGCAGTGAGCCATTAGAAGGCACAGAAACAACACTACCCAT CCCTTCAGTCAGAAATCTTAACATTTATGATATTGGAACCAGAACAATGAGAGTGCGATGGGAAGCTGCC CTTGGAGCTACTGGATATTTATTGCAGTATGAACCAGTTAACGCTACTGTGCCTTCAACTGAAAAAGAGT TGAGAGTTGGCGCATCAGTGACAGATGTACGTTTGGAAGATTTATTCCCCAACACCGAGTACACATTGAC TGTATATGCACTTTTTGATGAGCTGACCAGTGATCCTCTCACCTCACAGGAAGTCACTTTACCCATTCAG GGTGTGGGAAACATTAGAGTGAGAGATATCACTCACAGCTCAATGAATGTCCTTTGGAATGCTGCTCCTG GAAATGTTCTTAAATATATAGTCAGATATAAAACAGAGGAAGACGAAGAATTCAAAGAGGTGGAAGTGGA TGGATCAACAACAAGTACACGACTTACTGACCTTTTCTCACAAACGCTATATGATATCACTTTAACTGCA GTGTATGATGAGGGAGTATCTGAGCCACGTACTACACAAGGAACCACAGCACCAGTACCAGCTCCAAAAA ACCTCCGGTTTTCTGATATAGCAGTAACAAGTTTTAGAGGTACTTGGGACCATGGTGCTCCAGATGTAGC TTTGTACAGGATATCTTGGGCACCAGTTGGAGCTCTAGAAAAGAAGAAAGAGACAATTGTGGACGGTGAT ATAAACACTTTGCTCTTTGAAGAACTGGAACCCGAAACAGAGTATGAGGTTTCCGTAACTGCCATTTATC CTGATGAATCAGAGAGTGAAGATCTGTTAGGGGTTGAACGCACATTGCCAGAAATAATTGCTACAACACC AGCCCTAAGAACTGGCCCTAGGAATCTACAGGTGTTTAATGCAACATCAAATAGTTTGACTGTAAGATGG GATCATGCTCTGGGCGATGTGCAAAAATACAATATCCATTATAAGCCTGTTTCTGCTGCTGGTCCTGAAC AAATGACAAGTGTCACTGGAAAACAGAACAGTGTTGTGCTTCAGCGACTAAAGCCAGATACTCCATACAA CATTGTTGTTTCGTCATGGTACATTGGAGACGAAGAAGGAGGAAATATCTCAGGGAGAGGAAAAACAAAG CCCCTAAATACAGTGAAGAATCTAAGAGTGTATGATCCAACAACAAGCACTTTAAATGTACATTGGGAAG CTGCAGAAGGAAATGTGCGACGATATAAAATTTACTATGTACCAACAGCTGGAGGATCAGAGGAAATGGT AACAGTGCCTGGAAATACAGTCTATTCAGTTCTTAGGAGCCTTCAGCCTGACACATCATATACAGTATCT GTTGTCCCTGTCTATTCTGAAGGAGAAGGAGGTCGTATGTCAGAAACAGGAAGGACTTTGGTGCGGGGAA CAGCACGAAATATTCAAGTATACAATCCCACAACAAACACTCTGAATGTTCGCTGGGAGCCTGCTCCTGG AATGGTCCAGCAGTATAAAGTCAACTATGCTCCACTTCTTGGAACACGGCCTACTGAGTTTGTTGTAATT CCTGGCACTACCCACAATGTGCTACTGGAGCAACTTACTCCTGACACACCATACTCTGTGAATGTTGTGG CTCTATATGCAGATGGTGAGGGGGATCCTAGTAATGGTGAAGGAAAAACATTACCTCGCAGTGGCCCAAA AAATATTCGTGTTTTTGGAGAGACCACTAACAGTCTTTCTGTGAACTGGGATCATGCTGATGGACCTGTC CAACAATACAGAATCATCTATTCACCAACTGTTGGTGATCCCATTGATGAATATACAACTGTACCTGGTA GGAGAAATAATGTGGTACTGCAGCCCCTTTTGCCTGACACTCCGTATAAAATCACCGTGGTGGCAGTTTA TGCTGATGGCGATGGAGGACAACTGACAGGAAACGGAAGGACAGTGGGTTTGATTGCACCACGAAACCTT CAAGTATCCGATGAATGGTATACAAGATTTAGGGTTTCCTGGGATAGAATACCAACTCCTGTTCTTGGCT ACAAGCTGGTTTATCAGCCACATGATTCTGATGAATCAATGGAAGTATTTGTCGGGGATGTGAGTTCCTA CACTTTGCAGAACTTGTCTCCTGGCACCACATACGATGTGAACGTTTACGCTCAGTATGACACAGGATTA AGTGGGCCACTATCAGGACCTGGGACAACTTTGTACTTGAATGTAACTGATTTGACAAGCTATCAGGTTT CATGGGACTCGTTCTGTATAAGATGGACTCCTCACCGATCAGCCACTTCCTACAGACTGAAACTGAATCC AGTTGATGGATCACGAGGTCAAGAAATAACAGTAACAGGATCAGAATCGTCACACTGTTTTTCTGGACTG AAACAAGACACACCATATACAGCAACTGTTTTTGTACAAACACCTAACCTTGAAGGACGAGGAGTTTCAA TAGATGAGCGTACATTGATCAAACCGACAGAATCACCAACTACACCACCTGCTCCTCCCCCACCCCCTAC AATTCCACCTGCTCGGGAGGTGTGCAAAGGGGCCAAAGCAGACATAGTATTCCTTATTGATAGTTCTTGG AGTATTGGTGATGATAACTATAATAAAGTCCGTCAGTTTATCTTCAATACTATTGGAGCTTTTGATGTAA TCAACCCTTCTGGAATCCAGGTCTCTTTTGTGCAGTTCAGTGATGATGCCCAGACTGAGTTCAAGTTGAA TACTTATGCCGATAAAGCACAGGCTCTAGGAGCACTTGCCAACATTAGATACAAAGGAGGAAACACAAAA ACAGGAAAGGCTCTCAAATTTGTTCATGAGAAAGTAATGACATTTGAGAATGGAATGAGACGATCTGTTC CTAAGGTTCTGGTAGTAGTGACCGATGGCAGATCTCAGGATGAGGTTACGAAATCAGCCATGGACATTCA GCAGTCTGGTTTTAGTGTCTTTGTCATTGGTGTGGCTGATGTGGATTATAATGAACTAAGAAACATTGGC AGTAAACCAAGTGAGCGCCATGTTTTTATAGTCGATGATTTTGATGCTTTTGAGATGATTGAAGATAACC TGATCACCTTTGTATGTGAGACTGCAACATCAACTTGCCCACTCATTTACCTGGAAGGATACACTTCACC AGGTTTCAGAATGCTGGAAGCATATAACCTAACAGAGAAAAGTTCTGCCTCAGTACAAGGTGTCTCAATG CAACCAGGATCTTTCAACAGTTTCCCTGCATACAACCTTCATAAAGATGCCTTCATTTCCATGCCAACCG CAGAATTGCACCCTGAAGGATTACCACCTTCATATACTATTATATTTCTATTCCGTCTGCTACCAGAAAC TCCCAATGAGCCATTTTCTCTATGGCAAATTACAGATAAAGGTTACAAGTCACAAGTAGGAGTAAATCTT GATCCATCTAAGAAAACGCTGTCGTTCTTTAACAAGGGGGCTGCTGGAGATACTCAGACTGTAACTTTTG ATGGAAACGAAGTAAAGAAACTCTTTTATGGAAGCTTCCACAAGGTTCACATTGTGGTTTCTCCATCATA TGTCAGAATTTATATTGATTGCAGTGAAGTTGCTGAGAAAGAAATCAAAGAAGCTGGCAATATTTCAGCA GAAGGATATGAAGTTCTCGGGAAGACATTAAAGGGTGATAAAAAATCAGCCCCTTTCCTGCTCCAGATGT TTGACATTGTGTGTACTGTGACCTGGACAAGTAGAGATAGATGCTGTGATATTCCTGCTACAAGAGATGA AGCCAAATGTCCAGCTTTGCCCCATTCGTGTACTTGTGCACAAGACAGCATCGGAGCACCAGGACCCTCA GGCCCATCTGGTATTCCTGGTAGTAAAGGACCAAGGGGTGACCGGGGTTTGGATGGACCAGTTGGCCCAC CAGGTCAGCGAGGAGACCAAGGTTTACCTGGCTCACAAGGACCACCTGGACCTCAAGGACCACCTGGACT TTCCATTCCTGGAGAACCTGGTCGACAAGGAATAAAAGGAGATCCCGGTGACCCAGGATTGCCAGGAAGA ATGGGTACTCCAGGGGTAACAGGACCACCAGGAGCTATGGGCCCACCAGGCACAAGGGGTTTCACAGGAA AGGATGGTGCAGTAGGACCCAGAGGACCACCAGGACCAATGGGAGCACCTGGACCTCAGGGAGTGCCAGG TCCAAGTGGAAAACCAGGAAAGCAAGGAGATAATGGATTACCAGGCCCTCTCGGGCAGAAAGGAGACAGG GGTGAGAGGGGAGACATGGCATCTCAGAACATGATGAGATCAGTAGCAAGACAAGTCTGTGAACAGATGA TAAATAGTCAAATGAGCAGATTTAATCAGATGCTGAACCAAATTCCAAATGATTACTATTCCAATCGCAA TCAGCCCGGTCCTCCAGGCCCTCCTGGTCCTCCAGGCAACTCTGGCACGAGAGGAGAACCTGGAGCTGCA GGCAGATCTGGATTCCCAGGAACACCTGGTCCTCAAGGACCGCCTGGAGAAAGAGGAATACCAGGAGAGA AAGGGGAGAGAGGTAACCCAGGAATTGGATCCCAAGGACCCAGGGGACTTCCAGGGCCTCCAGGACCTCC AGGCGAATCCAGAACAGGACCTCCAGGATCCACAGGCTCCACAGGACCTCCAGGACCTTCTGGTCGCCCG GGTAACCAAGGAATTAGAGGGCCTCCTGGTCCAGCTGGATACTGTGATGCTTCAATGTGTGCAAGCATTC CTTACAATGGGCAAGGATACCCAGAACCATATCAGCCTGAAAGTGGACCGCAGGAACCAGAGAATCAGCC TTACGTAGTACCTATGCAGCAAGAGGGTCCAGATGAGGATTTTGAGGACTATGGACATGAATATGCAGAA CATATGCGATGGAGGAGATCCTTACCAAAGAAATTTTAAGATATGTGTGCAATATCCTTGGTTATATTAG CTACAAAGCACATGTTGCCATTTCATTCCAGGATACTGCAGCTGTATAATGATGGAAACTTACAGAAAAT AAAAATGAAGCTTTTTTTGATGCCCCTATAAGCTTGTAAAATATTTTTGGCTTAATTTCAGATCTGTGAA TAGAGGCAATACCATGTAGCAATGTTAAATAGCTCTAATGCAGATGCAATTTAAGGCTTTCCATTGGCTG GTAACCCAAAGCAGAGGTTTAGCCCATTGCATGCTAGATGAAAATGCAGCACATTACCAGGAAATGAATT GCACTTTCATCTTGCGCTTTTCTTATCTCTTAATTATCAGCTGACTGTATTAATTTAGAATCAGTCATTG TACACTATCATCTTCTAGTCCTTCTGTACTCATCTACTCATCTAATACAATGCTTCAGAAAAGTTATGCT GCTTTTTTATACTATACTATACTTTCCTTTTAACATTCAGAAACCTTTCAACATAGCAAAACCCCTCCAC AGAGCTGAGTACTCTGTGTCGTTCTGATGCAGGTTTATATTTTAGACACTTAACAGTTACATGTATGCCA AGTTTCAGACAGTGCTACAGAAAAGGAGTTTGCATGTTTGTGCTGTATATTTAGTATGAACAGTTTTCAG AATATAGTGTTTCTTAGTTCTCAAAGCAGTTTGAATTTGTCTGCAAGGCTATGAAAATAGAATTGCTGTT TGAAGATTTTTAACTGCAAATTGTGAATTTCACTGCCTTATATTTTTTATTTATTTCTGAAACAAAAGAG GCGTTTTTCAATAAAACTACTGAAAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds