Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_031892381.1 PREDICTED: Xenopus tropicalis synaptic Ras GTPase activating protein 1 (syngap1), transcript variant X12, mRNA CTCATTCTGAGCATCCTTCCCCTCCTCCTCCACCTCCTCCGCTCTCTCTCTTTCTCTCGCTCTCTCCATC TCTCCGTTTCCCTCCTCCTCCTCCCCCCCTTTAGATTTCCAGCTGCAAAACCTGACGGCCTGTTTTTTTT GTTTTTGTTTTTTTTTTTTTAAGATAATTTGTCCTCTTCACCCCCTTTGCCCTCTTTCTGACACCCCAGT CTTTCCTCTTTCATCCCATTTTGGGGCTCCCTTCACTTTAATTTATTTTTTCTTTTTTTTTTCCGTCCAG TGTTTTCCCCTTATAATTTCTACTTCATTTCTGCTTGTATTTGTATGTGTGTATCTTCTTTGTACTCTCC TGCTCCTTGATACACTTACCTCTCATCTCCATCTCAGGCATTTTCATATTTGCAACCTGTCTTTTCCATG TACATACACTGTACATATATCCATAAATGCATTTAATTAACATAAATACTCCCTATTGCTTTTAATACCA TTATTGCATCTCTCTGTCTTCCTCAGTCCATTCTTTTTCCTGTCATCTCCCCCTCTCACTCTCACCCCTG CAGTGCAATCTTCCTTTTCCCCAATGTGATTAGATTCTATTCCTTCTCCTGGTGTTTTTTCTCCCGGGGA TTTTCGATGTTCAGATTTACGTCTTAGCTGTGGAATGATGTTCTATGCTCCCTTCAGAGATGCTCGAGGA CCTCCCATGCATCGTATGCCCTATGTCACCTCTCCATACGACCGTCCAGCCTGGAACCCAAGATACTGTG TCCTCTCTGGAAATCAGCTTCTCATGCTTGATGAGGAGGAGGTTCACCCGCTGTTGATACGTGAAAGGAG AACTGATCCAACCAGAACAAAGTTCCTAAGGCGCACAGTCAGTGTCCCCGTGGAGGGGAAGCAGCCTGAC GAACACGATTATCACCTTGCACGTTCCCGGAGGAAAAGCGTCCCAGGGGGAAAACAGCCCAGTATGGACG CCCCTCCCACCGCCCCCTTTCGACCGTCGCAAGGATTCCTGAGCCGTCGCTTGAAGAGCTCTATAAAGAG GACAAAGAGTCAGCCCAAATTAGATAGGACCAGCAGTTTCCGGCAAATATTGCCAAGGTTTCGAAGTGCT GATCATGATAGGGCACGGCTCATGCAGGCCTTTAAAGAGTCACACTCTCACGAGTCCTTGCTTAGTCCTA GCAGTGCTGCAGAGGCTTTGGATTTGAACTTGGATGAGGATTCTGTGGTGAAGCCTGTACACAGCAGCAT CTTGGGACAGGAGTTTTGCTTCGAGGTGACCACATCATCAGGTACCAAATGTTTTGCCTGCCGTTCTGCT GCTGAAAGAGACAAATGGATTGAGAATCTTCAAAGAGCTGTAAAGCCCAATAAGGATAACAGCAGGCGGG TAGATAATGTCTTAAAGCTGTGGATTATTGAAGCCCGTGATCTTCCCCCCAAGAAGCGCTATTATTGTGA GCTCTGTTTGGATGACATTTTGTATGCCCGTACCACCAGCAAGCCTCGGAATGACACTGTCTTTTGGGGG GAACACTTTGAATTTAATAACCTTCCAGCTGTTCGGAACTTGCGCTTGCACCTCTATAAGGACACAGACA AGAAAAGGCGCAAAGAAAAGAGCAACTATGTGGGCATGGTGAACGTGCCTATTGCCAGCATTAGTGGGCG CCACTTTGTGGAGCAGTGGTACCCGGTTTCTCAGCCCACATCCTACAAGGGGAAGAGCAGCTGTCCCTCC ATTCGCCTAAAATCCCGATACCAAACCATGAGCATCCTCCCCATGGAGCTGTACAAGGAGTTTGCAGAGT ATGTCACCAACAACTACCGGATGCTGTGCGCTGTACTGGAGCCTGTGCTTAGCGTGAAGAGCAAAGAGGA GGTTGCCTGTGCTTTAGTGCATATACTGCAAAGCACAGGCAAGGCCAAGGACTTCCTTTCAGACATGGCT ATGACCGAGGTTGATCGCTTCCTTGACAGAGAGCACCTTATTCTCCGTGAGAACACACTTGCAACTAAAG CCATAGAGGAGTATCTGAAACTGATAGGACAGAGATACCTCAAGGAAGCCATTGGTGAGTTTATTCGGGC ACTGTATGAGTCTGAGGAGGACTGTGAGGTTGATCCCATGCGTTGTCCACCCTCTGCATTGCCCGATCAC CAGGCCAATCTCAGGATGTGCTGTGAACTCGCCCTTTGCAAAGTCTTTAACTCTCATTGTGTGTTTCCTC GGGAGTTGAAGGAAGTCTTTGCATCTTGGAGGATGCGCTGTGCAGAGCGCGGCCGGGAAGATATAGCAGA TCGACTCATCAGTGCCTCTCTCTTCCTCCGATTCCTGTGTCCGGCCATTATGTCCCCCAGTCTCTTCAGC CTAATGCAGGAATACCCTGATGAGCAAACATCTAGGACCCTCACGCTCATCGCAAAAGTCATCCAGAACC TGGCCAACTTCAACTACAAGTTCAGCAGTAAAGAAGAATATATGTCCTTTATGAATGAGTTCCTAGAGAC GGAGTTGGCGAATATGCAGAATTTCCTGTATGAGATCTCAAACCTGGATTCGCTCACCAACAGCATTAAC TTTGAGGGCTACATTGACCTTGGGCGGGAGCTGAGTACACTTCATGCCCTGCTTTGGGAAGTGATCCCAC AACTTAGTAAGGATGCACTTATAAAGTTGGGGCCTCTTCCACGCCTCCTTAATGACATCAGCCTAGCTCT CAGGAACCCCCACATCCAACGACAACCAAGCCACCAAGAACGACTGCCACCCCCCAAACCTGTCATTCTG AGGGGACCTTCAGCTGAGCTGCAAAGCTACTTGGTGCGAGACCTCAACAGCTCTATTGACATGACTCGCC TACCCTCACCTACTAAGGATAAACCATCAAAAGATATGTTTTTTGTTTCACGTCGCCCGCTAACTCGCTC CTCGCCAGCCTATTGCACCAGCAGCTCAGACATCACAGAACCAGACCAGAAGATGCTGAGCGTGAACAAG AGTGTGTCCATGATGGACTTGCAGGACAGCCGAATGAATAGCGTAACCAACTTGCAGGCCAACCCGCTCT TCCACATGGCTCCCGATGGGCCTGGTGGGCCCCCATCTCATCCTGCTCCTCATCGACCAGACCCCGGAGC TGATGCCTTTGCCCCTTTCCATGGGTATAGCAAGAGTGAGGACTTGAGCTCCGGAAAGCATATGCTTCAC AGTCACAGCTACAGCGACGAATTCAGCCGGCAGGGGTCAGAGTTCAGTAAAAGGCAGTTATCCCTCCAGG ACAATCTCCAGCACATGCTTTCACCCCCTCAAATAACCATTGGCCCTGGAGTGCCACGAAGGCAAGACTC ACAGCCTCCCCCTTTGCAGAGGGGAAAATCCCAACAACTGACGGTGCAGGCAGCGCATAAACCTCGGCCA AGCAGTGGCAACCTCCTACAGAGCCCAGAACCAATGTATGGGGCAGCAAGAATTAGGCAGCAGTCAGTTG AAAAGGATGCAGGTGGCTTGAAACCATCAATAACCAAGCAGCACTCCCATGCACAGGCCACTCTGAACCC TGTCACTCCAGCCTCAGAACGCACAGTTGCCTGGGTATCCAACATGCCCCACCTTTCAGCAGATATTGAG AGCGCTCACATAGAACGGGAGGAGTATAAGTTGAAGGAATACTCTAAATCAATGGATGAGAGCCGTCTTG AGAGGGTGAAAGAGTATGAGGAAGAGATTTACTCCTTAAAAGAGAGGCTGTTGATGTCAAACCGGAAGCT GGAGGAATATGAGAGGCGTCTTCTTACACAGGAAGAACAAACTAATAAGATGATGCAGCAATATCAGTCA CGCCTGGACCAGAGTGAAAAGCGTTTGCGACAGCAGCAGGTTGAGAAGGACACGCAGATAAAGAGCATCT TAAACAGGTTAGAAATGGTTGATGCTGGTGGAGGAGGAGATCAGGAAGGATCACTCACAAGAACCAATCG ATATGAAGAGGAGACTTATCGAGGCTCAGAGAAGAAGTTTCCCTCCGTGGGTACAGCAGACCCGCGTCTG AGGCTGGCGACTCCATGGAATGGGGCCCTCCCGCCTCTGCCTCCTCGACTCCAAATCACAGAAAATGGAG ACTTTCTAAACTCAAGTGACCATCACTAACTGGAGCTGAGGGGTCCATCCAGGAGCCTGTGAGTGGGAGA AGGGAAGACTGGCATTCCCCCACTGAGGCGTCTGTCCTAGAGCCTGAGGGGGAGGGGGCTGGGAACCCTT TTCCCCCTGACTCTGACCCCCTCCCTCTGTGCCGTCCAGACCTGCGGCCGACAATCTGTGTGACCCCAAA CACATGGGGGAGACACCCGCACCTGGGAACTGGAGAGAGAGAAGGGAGTAACCGCACTGAACTTACCCTG CTACTCTTTATCCTGCACCTTAATACCCTAAAATCCTATAACCATATAATTTCCTTTATTTATCCCTCAC TCTCTTCTATCTCCCCCTTCATGCTTTCTGTCTCAGGTCTGAGGCCCTGAGATTCGCACTGACAGATCTG CACTGTAGGGGACTCCCTCATCTACACTCCTGCCCCTTTTACTTCATCTTTCCCTCCTTACTATTCTTTC TTCCCACTCAAAACATCTCCTGTATTGCCCTTTAGTTATAACTTTAACTTTCATAAATATATATATATCC CTCTTTTATCTTCTCCCCTTTATCTCCTTCCCCTTCTTATTTTTTTGTTCTGTGCTAAATGAGCACATTT TCATGGAATCAGCTGAGACGACTATTGTCACAAAGGAAGTAGGAGAGGAAACTAGGACTAGAATGAGGAA GAGCTAAAATACATGAGGTACATTTAAGGAAAGGTGTATATAAATGGGAAATTGAGGGGAAAAGAACGTG TGTGGTGCATTTTGGGTTAATGTCATTGCTGCAGGAGATATTAATATCCTGAGGGTGTAGGAGTGACAGA ATCTACACATAAGAATCCTTTGCAGGAGCAAGGGGTGAAAACTTTCAGCTGGATATACAGGTTCGTTTGT ACATTTTACCTCCTTAAATGGGCAGCTGATATGGGAGACTACAAGTCATCACTCATTATTATTATTATTA TTATTATTATTGAAGGTTTATTTATTTCTTGAAATCTGTCAGTCCACTTGGAGCCGAATGAGTGATACGA GTCTCTCACCCAAAGAGCTTACAATCTAACTCCACTTCCTGTGACACGGGGAGATTATAAATAACTTGGC CTCAAAGGTCGCATGGAATTTGTGCTTGGATGGGGAGGGAGGCAGGGAGGGGAAATTCCATCCATATTAG TGGTTGGTGCCATAACCTGCAGGGCCCCTCTGCACCGCGGTGACAGGAGCTGCCGGCCCTGAAATGAATG TGCCAGTAAAGATATTCTGATTGTATTTGGTTCCTTTTGACGTTCTGTGTAAATATAAAACATTTAAAGA AAAGAGAATTCAGAGTGTTCTTCCGGAAGATATAAAAAGACAGTATTTATAGATCTTTATTGAGAAACAA ATGATAATTTGGTCCTTAAAGGTTTCCAAAATTCGGCTCAGATTCTTTTATTGCAGAATATATAAAGCAT TTTATACTATACATAGATATATATATATATATAGACAGAGACAGTGTTCATGGCAGTGCCCATAAGAGCT ACAAATTACATTTACTAATGGAAATGTGGCTTTGGCTTTCACTGAGGCTGGGTTCTTGATCTCTGCAAAA AAACAAATAATGTTAAAAAAATCCAGTTTTCCTTAAGGCGAAACCTCATATGGCTGCTTTCTGTTTAAGT TCTGCCACTTCAGCATTAAAACATGAATACATACATATTAGCCCGTACAATTTTTTTATTTATTGGCTAT TAATGCAAATATCATCAGGTAAAACACTGCTATGTTGTTACCTCAGTCGAGGGGTACACCGTCTTGGGGT TCTTAAACTTCAGCTGTGAGATACATTAAACCCCTACCCCTCAGTGTTTGCTAAAGGTTGGGAGCGAGGG CAGAAGGGGTACAGATGAAAGTGATAGTGTACACTGGAAAACAGTAACAATCATCTGCTCTATGGTGCTA CCAAAACAGGAAAGGATGGAAACCCCTGCCCTGATAACATGTACAAAAATATAAAATGTTGTATAACAAT TTCTATTGTACAAAAAATCTATAGAGATCATGTTGTAAAAAAAAAGTAAAAAAAATCAATGATCACAAAT ATGGATTGCTTCAGTTAATAGGCGTGGAGGGGCTGTATCGTGTTGGATGATACATTTGGTCACACGAGTG TTGTGCTGCTTGCTCTAGTGGTTCAGTTTGTAGGTTGGAGTGGCTGTTTTTTCTTGCTGTGATGTGAATG GCAAATACTAGAAGGATTAGTAGGGTACAGGCCAAGATGGGCAATGTCAGACACAAGGAAGACTGGGGTT CATTGTGTGAACAAAAACCAAGGCAAGGCAATAAAGGGGAAGTCATACAATGGAACAAACTAAGGCTGAC AAGGACAATATAGGAACAGATGTGTATTGATGATCTGACAGGTATCTGGATTTTAATGATAAAGTCCAGC GAATCAAATAATCACCAGGTAACCAACAAGTAAAGCACTGATACCTACTGTTTTTTTTATCTTTGCTTAT GCTAATTCTTCAGCAGTGAATGGACACATTTAATTTCTGTTAAAAAATAAACTGAGGGTGGAACAATGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds