Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
JBrowse2 Tracks
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041578053.1 PREDICTED: Xenopus laevis sodium channel, voltage gated, type I alpha subunit S homeolog (scn1a.S), transcript variant X2, mRNA GAGTAATGACAGTCATGGTTTTGCATAGACATGTTGTTCTAGGAGAGGTTCAGCAGCAGCTGCCCGTTTG CATTCATGCTCTTGTTGGCAATTGAAGTTATGCAAAGCTCCAAATGCATGGTCATGATATGTATAACAGC CTCCTCTACTTACCCTTTCTCCAAAAGTCTAGCAAATCTGTTCCCTGAGAGGGGGCTGCTAGTGACATCA CTAGGGACGACTTCCTTGGCTTCAGTAGTCGCAACAAGCACTGTGCAAACCAATAATGCTGAAGGGGTGG GAATAGCACAGGAGACAGTGCTCATCTGCCTGGGAGGCACCTTTTATCTCTCTGCCTCCTGCTTTCCCCT AGCCCAGCTATTGTTTTCATTCACAGCCCCCCAGCTCCAGCTCCTGGAAAGGTGTCTGGCTTTGTCATTG ACGCTGCTGTTGCTGTGCTGCTGCGTTCTGTCGTGCGCGACATTTTTCTTCCTCCTCCTTCTATAGCTGC AACTGTCAGAATCCAGGAGGGACACGCCTGGCACAAGGGGAACACAGAAAGGATCTCGCTGGAGGGGAGG GGGGGAATACAAAAAAAAACACACACAGACCGAGGACAGAGAAAAGGGAGAAATCTCATTCAGCTGTGGA ATAAAACACTTACAGGCGTCTGGATGGACCGAACCTAGAGGCTCTGCTTTCCCTGATCCAGAGGGAGGCG AGGCGTCTCTGCTCGGATTTCCATTATGAAAGTAGCAAAGCAGTAAATTAAAAGGTGCAGGATGAAAAGA TGGCGCAGGCACGACTTGTACCACCCGGACCTGACAGCATCCGCTACTTTACCAGGGAATCTCTTGAAGC TATCGAGAAGCGCATCACAGAGGAAAAAGCTAAAAAGCCCAAACAGGAACACAGAGATGATGACGATGAA AATGGCCCCAAGCCAAGCAGTGACTTGGAAGCAGGCAAAAGTCTGCCATTTATATATGGAGACATACCTC CGGGAATGGTATCAGAGCCACTGGAGGACCTAGATCCTTATTACATGAATCAGAAAACTTTTATAGTATT GAATAGAGGGAAGGCAATCTTCCGCTTCAGTGCCACATCTGCCTTGTACATTTTAACTCCTTTCAATCCT CTTAGAAAAATAGCTATTAAGGTTTTAGTACATTCATTATTCAGCATGCTCATTATGTGCACTATTCTGA CCAACTGCGTCTTCATGACAATGAGCAATCCTCCAGAATGGGCCAAGAATGTAGAGTACACATTCACTGG GATTTATACTTTCGAATCTCTTATAAAAATTCTTGCAAGAGGTTTCTGTTTAGAAAAATTTACCTTTCTT CGAGACCCATGGAACTGGCTTGATTTCAGTGTCATTGTGATGGCGTATGTAACAGAATTTGTAAACCTAG GCAATGTTTCAGCTCTTCGAACTTTCAGAGTATTGAGAGCTTTGAAAACTATTTCTGTAATTCCAGGCCT GAAGACCATCGTGGGTGCACTGATTCAGTCGGTTAAGAAGCTTTCGGATGTTATGATTCTCACAGTGTTT TGCCTCAGTGTGTTTGCACTAATAGGACTGCAGCTTTTCATGGGTCACCTGAGGAATAAATGTCTGCAAT GGCCACCAACTGACTATTTCCCTTTAATAGATATTTCTCCCATCTTGAATGGCACAATGAACATACATGA CCCTTTTGGTAACACAACAAACAGCACATTTGACTGGGAAGAATATATTAGAGATCAAAGTCATTTTTAC AAGCTGGAAGGACAGAAAGACTTCTTGCTCTGTGGTAACTCCTCTGATTCAGGACAATGCCCAAAAGGAT ATATTTGTGTAAAAACCGGTAAAAACCCTAATTATGGCTACACAAGCTTTGATACCTTCAGCTGGGCATT CTTGTCTCTCTTTCGGTTAATGACCCAAGACTACTGGGAGAATTTATATCAACTGACACTACGAGCTGCT GGTAAAACGTACATGATCTTTTTTGTGCTGGTGATTTTCCTGGGTTCTTTCTACTTGGTAAACTTGATAT TGGCTGTGGTGGCCATGGCTTATGAAGAGCAGAATCAGGCAACATTAGAAGAAGCAGAGCAGAAAGAAGC AGAATTCCAGCAGATGCTTGAACAGTTGAAAAAACAACAAGAAGAAGCACAGGCAGCAGCTGTAGCAGCA TTAAACATGTCTAGAGAGTACAGTGAAGAAGGTGGATTCGGACCCCTCTCAGAAAGTTCTTCTGAGGCCT CAAAATTAAGCTCAAAAAGTGCCAAAGACAGAAGAAACAGGAAAAAGAAAAGAAAACAAAAAGAACTGGG TGAAGAATATGAAAAGGGGGATGATGAGAAGTTTCCTAAGTCGGAATCAGAAACAAGCATCAAAAGGAAA GGCTTCCGTTTCTCTATCGAAGGAAACCGGCTTACTTATGAAAATAAGTTTTCTTCCCCACACCAGTCAC TGCTAAGCATCCGAGGGTCTTTGTTCTCACCAAGGCGAAATAGCAGAGCAAGCTTGTTCAGTTTTAGAAA TCGTGCAAAGGATGTAGGATCAGAAAATGACTTTGCAGATGATGAGCACAGCACATTTGAGGACAGTGAG AGCCGAAGGGGCTCTTTATTCATTCCAAACAGACATGGAGAACGACGGAACAGTAATATAAGTCAAGTCA GTAAGTCATCGAAGACCATAACAGTGCTTCCAGCAAATGGGAAGATGCACAGCACAGTGGACTGCAATGG AGTGGTCTCTCTACTTGGTGGCCCATCCGTTCCAACTTCTCCTGTGGGACTGCTTCTGCCAGAGGGCACA GCTACAGAGACAGATATCCGGAAAAGACGGTCAAGTTGTTACCAAGTCCCCATGGATCTGCTGGAAAATC CGACTACTAGGCAAAGAGCACTTAGCATTGCCAGTATTTTGACAAACACAGTTGAAGAACTTGAAGAGTC CAGACAGAAATGCCCTCCATGCTGGTATAAATTTGCAAACACTTTTCTTATTTGGGACTGCTGCGAAAAT TGGCTTACAGTTAAGCACATTGTGAAGTTAATTGTGATGGACCCAATTGTCGACCTAGCAATTACCATCT GCATTGTTTTAAATACATTGTTTATGGCCATGGAGCATTATCCAATGACCAAGGAATTTAACGATGTTCT GTCAATAGGAAATCTGGTTTTTACAGGAATCTTTACAGCTGAAATGGTTTTTAAGCTCATTGCCCTGGAT CCATACTATTATTTTCAAGAGGGTTGGAACATTTTTGATGGCATCATTGTGAGCCTTAGTTTAATGGAGT TGGGCCTTGCAAATGTGGAAGGATTATCAGTACTTCGCTCATTCCGATTGCTCCGTGTGTTTAAGTTGGC AAAATCCTGGCCTACACTGAACATGCTGATAAAGATAATTGGCAATTCTGTAGGAGCTTTGGGAAACCTG ACCCTGGTGTTGGCCATCATCGTCTTTATTTTTGCCGTGGTTGGGATGCAGCTGTTTGGTAAAAGTTACA AGGAATGTGTCTGCAAAATTGCAGAAAACTGTGAGCTTCCTCGCTGGCACATGAATGACTTCTTCCACTC CTTCCTTATTGTGTTTCGAGTGCTCTGTGGGGAATGGATTGAAACCATGTGGGACTGTATGGAGGTTGCA GGACAATCCATGTGCCTCCTCGTATTTATGCTAGTGATGGTTATTGGAAACTTAGTGGTTTTGAATTTGT TCCTGGCCTTGCTTTTGAGCTCCTTTAGCTCAGACAACCTCACAGCCACAGATGATGACAACGAAATGAA CAATCTCCAGATTGCTGTGGGAAGGATACAAGGGGGAATAGATTATGTCAAAAGAACAATTCGAGAATGC ATCCAGAAAGCTTTTGTTAAGAAGCAAAAAGGTCTAGATGAAATCAAACCACTGGAGGAGCTTCACTACA AAAAGGAAAGCTGCTTATTCAACCATAATGCAGTCGAAATAAATAAAGTCCTTGATTATCACAAAGGAGA CAATGGGACAACTAGCGGAGTAGGCAGCAGTGTTGAAAAGTACATTATTGATGAAAACGATTATATGTCA TTTATACACAACCCCAGCCTAACCGTAACAGTGCCCATTGCAGTTGGGGAATCGGATTTTGAAAACTTGA ATACAGAGGACTTCAGTAGTGAGTCTGATCTGGAAGAAAGTAAAGAGAAGCTAAATATGACAAGTTCATC TGAAGGCAGCACCGTTGATATCAGGCCACCAGGGGTAGTGGTGGAAGGAGAGGGGGAACCAATAGAGATA GAATGTGAGGAAGATATGGAACCAGATGCCTGTTTTACAGAAGGTTGTGTCAAGAGATTCCCAATTTGCT ATGTTAACATTGAGGAAAATAAAGGGAAATTATGGTGGACATTTAGAAAAACCTGCTTTACCATTGTTGA ACATAACTGGTTTGAAACCTTTATTATTTTTATGATTCTTCTCAGCAGTGGAGCTCTGGCTTTTGAAGAC ATCTACATTGAACAACGCAAAACAATTAAGACAATGTTGGAATATGCAGATAAAGTATTCACCTACATAT TTATCCTAGAAATGCTTCTGAAATGGGTGGCATATGGTTTTGTGAAATATTTCACCAATGCCTGGTGCTG GCTAGACTTCCTGATTGTTGATGTTTCTCTTGTTAGCTTAATAGCGAATGCACTGGGATATTCAGAACTA GGTGCTATTAAGTCTCTTAGGACACTAAGGGCACTGAGACCTTTAAGAGCCCTCTCACGTTTTGAAGGGA TGAGGGTGGTTGTGAATGCCCTAATTGGCGCTATTCCATCCATCATGAACGTGCTGCTCGTTTGTCTTAT ATTCTGGCTGATTTTCAGTATCATGGGGGTAAATCTATTTGCTGGCAAATATTACCATTGTGTCAATACA ACAACTGGTGAAATGTTCGATGATACTCAAGTTAGCAACAGATCTGATTGTCTACATTTGAATGAAAGTG CCCGATGGAAGAACGTCAAAGTGAATTTTGACAACGTAGCTGCTGGATACCTTGCATTGCTTCAAGTGGC AACATTTAAAGGCTGGATGGATATTATGTATGCAGCAGTTGACTCAAGAAAGGTAGAAGAGCAGCCACGT TACGAAGACAACCTTTATATGTACTTATACTTTGTTATCTTCATTATCTTTGGCTCTTTCTTCACTCTTA ACCTCTTCATTGGTGTTATTATTGACAACTTCAATCAGCAGAAGAAAAAGTTTGGAGGTCAAGACATCTT TATGACAGAGGAGCAAAAGAAATATTATAATGCAATGAAAAAGCTTGGATCAAAGAAACCCCAGAAGCCC ATCCCCCGACCACCAAATAAATACCAAGGCTTAGTCTTTGATTTTGTGACAAAACAAGCATTTGATATCA CCATCATGATCCTTATTTGTCTTAACATGGTAACAATGATGATTGAAACAGATGAGCAAAGTGATGACAT GGAAAACAACTTGTATTGGATCAATTTGGTCTTTATTATCCTTTTCACTACTGAAAGTATTCTCAAACTG ATCTCTCTGCGCTATTATTACTTCACTATCGGCTGGAATATCTTTGATTTTGTTGTTGTCATTCTCTCCA TTGTAGGTATGTTCTTGGCAGACATGATTGAAAAATATTTTGTTTCCCCAACTTTATTCAGAGTTATTCG ACTTGCTCGAATTGGGAGAATTTTACGTCTCATCAAGGGAGCAAAGGGTATTCGTACATTGCTGTTTGCT TTGATGATGTCACTCCCTGCATTGTTCAATATTGGCCTCCTGCTTTTCTTGGTTATGTTTATTTATGCTA TTTTTGGAATGTCCAACTTTGCCTATGTGAAGAAAGAATCTGGCATTGATGACATGTTCAACTTTGAGAC TTTTGGAAACAGTATGATCTGCTTATTCCAGATCACAACATCAGCTGGGTGGGATGGTTTATTGGCACCC ATTCTTAACAGTGGAGCACCAGACTGTGATCCACAAATGGAACATCCTGGAAGCTCCGTCAGAGGTGATT GTGGCAATCCATCAGTTGGGATTTTCTTTTTTGTTAGCTATATAATAATATCATTTTTAGTGGTGGTAAA CATGTATATTGCTGTTATTTTGGAAAACTTCAGTGTTGCTACTGAAGAAAGTGCTGAACCACTTGGAGAA GATGACTTTGAAATGTTTTATGAAGTATGGGAAAAGTTTGACCCTGATGCAACACAGTTTATCGAGTATA GCAAGTTATCTAATTTTGCTGATGCCCTGGATCCACCTCTACGCATAGCTAAGCCCAATAGAGTTCAGCT AATTGCTATGGATCTCCCGATGGTAAGTGGAGACAGAATTCACTGCCTAGACATTTTGTTTGCCTTTACA AAACGTGTCTTGGGTGAAGGTGATGAAATGGATGCTTTACGGCTACCAATGGAAGAACGTTTTATGGCAT CCAATCCATCAAAAGCCTCTTATGAACCAATTACGTCCACTTTACGACGAAAGCAAGAGGAATTGTCTGT CATTATTATTCAACGTTGTTTCAGAAAGTATCTATTAAGAAAAACAATTAAAAAAGCTTCTTATTTATAT AAGAAAAATAAACTTGCAGTAAATAGCTTGCCTATTAAAGAAGACATGGTTATTGACAAGCTTAATGGAA ATTCTACCACAGAGAAGACAGACATGACTCCCTCGACCACTTCACCTCCATCGTATGATAGCGTGACAAA GCCAGAAAAAGAGAAACATGAAAAGGACAAAGTTGAAAAGGAAAACAAAAGCAAAGATGCCAGGGAAAAT AAAAAATGAAACTGCACATTTTCATTTTCGTGATATATTGTTTACAGCCTGTGAAGATGACCCATTTGTG TCAACAGGACTCCTGTAGGAGATCTATGCCAAACTGACAGTTGTAACATATATGTACTCAAGGTCAGTGC CTCTAAAACAGTGACCTCTTGTCAAGTGATACTATAACAACCTTGACTGGTGGTTACTGTTTTCACAACC AGTTGACACTTTACATATGAAGAGTCATGATGGCTCCTTAACCTGTTGGGACCAGTTAAGGTAATGCAAA CCTATAATGTTTGTGTGTTTCACATAAAACACTGTAGTACAATATTTGTGTCCACAGTTTGCATTTCCAC TGCTATACTTGCCATATGTTTACAAAGAAAATGTGTTAGTGAATTAACCATTTTTATTTCATTTGTAGAC TGTTTATTTATATATATGTGAATATTTTTGTAAATGGGTTTTACAGTAAGTGGGGTTAGTGCAAACTTTT AAGGGGAAACGGTAAGTCAAGGTAAAACAGAGATGACCACACACTGTATATGTGAAGATGGAAAACACAG AAATGCACACAGCTTCTATATTTTGAAAAAAACATTTGTCACTCCCAAATTACTAGAGCACATAAGCACC GTAATTTAGATTAAAGGAATTTCTGCATCCAAAATCAAAAGAGGCTCCATTTTGTCTACTTTTTAAATAT ATTTAAGTTATTAATTTCCAAATAGCAATATATTTTAATACACCTCTTATTTCCATAATTATTTAATGCC CAGCAAAGTATGTTATGTTTTATTGTTTACAAAATATGCTTGCACATTTATATCTCGTCAATTGTGAAAC TCATAAAGGCATGGGCCCTAGAAGAGATGAAATATATCCAATAAAATGTATAGGAAAAGGTATTATTTTT ATGAATAAGAATCAAACATTACATAAGGTGACATGGAGTGCATATCTTCTAGTTTTCAGAGAGATAATAA ATATACTATAAATACTGATTAAACTTAATAAACAAGTGCAATGAATCATTATCTCATGAACATTTATTTA ATGATCAACATAGTTATGTGAGGAGAGCTCCTATGTTTTTTATATAACTACTGTATATTTGGAAAGCTAT TATGGTTGAAAATATGAAATTGAAAATATCATTGACTATGTGCAAAACAATCATTAAATGAGAACAAAAC ATATCTATATATTTACAACCTGGTAATAATCAGTCGAATAAGTGATCAACCGCGCAATTTAAAAAAAAAA TATTTGGAATAAACACTTCCACCATTGTATTGTTTCATACTTGAGTTTTGCGCAAAGTATTTTCGAAACT TTGGAAATTCATGAAATGCTTATTAACAGACTGGATAATGTGGTAACAGATAAAATGCTGTTTTAATGCA ATGTTTTATGTTGACAAAACACATATTGATAGAAGGTGTGAAGTTGAAGGTATGTGCAACTGAAACACTA CTGTGACTCAAACATGAATCTGATGAATTCGTACAAGAAGTAAGGAGAATTTATGCTAATAAATGGGTGT CTTCCCTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds