Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041564612.1 PREDICTED: Xenopus laevis centrosomal protein of 85 kDa-like (LOC108717915), transcript variant X2, mRNA TAAAATGCCTCCGTAGCTTTCCTTCTCCTTTAAGAAACATCACATCACATAAGTCAATAACTTTCCCAAT TATACAGCATACGTTTGCCATATGGCACTCTATAAGCACTAAACCTAAATGGCTTTCTAAACTTCATTCT CTAGCACCCTTATTTAATAACCCTGGCTTTCCACCTGGTCAGAAGCCTAAACAATTCTGTTGGCGGATAG ATAAAGGGCTTACACATATTCGCCAGTACATACTACATTACAAAATTATTAGCTGGACAGTTCTTCAGGA CAGATATAATGTACCAGTTCAACTTAACGTTATAAGAAAAAACTGAAAATACCTTCAATAAATACATTTA TAATAATAGATGTTTAAAAATGCTATATATGTTGACTTGTACAATTTTCTGTTAACACTGGATACTTAAC GTTATAAGAAACAACTGAAAATACCTTCAATAAAAATAATGAATAATGAAAGATCAAGTGTAGTATCGAG TGTAGTATGTGTTCTTATCAGTTTAACAGCAGGGTAAGCACACCACTTGACTGACAGAACAGAGAACCAC TGGGTTGAGTCTAGGGGCCAGGAGGCTTTGCTTTGAAGCCTGAGTTTTTTTGCATCCCAGGATTTTCACA CCTGGGGTGTCTTACCTCACAGGTCTTGCACTACTATCTGTGAGCACATCACTAGCACACTTTACTCTGG CACCTCATTGCAACACCTTGCTCTTAATCCCAGCCTTTTGGCACACAGGATAGACAATCATTTTTACAAA TCTGGCTATTAGGCTGGGACCACTTTTGGTCACCCTTTGATTTACCCTAGTTATTGGTCGCTATGGCACT GTTTTCTTTTTGCACTTTTGGATCTATGTGCACTGATCTGGGGGGGGGGGGAGATGTGTGGCCATTAGGA TCCTTCCCCCCTGAATTCCCTGGTCCAGAAGAGGGCACAAAGTTGCTGGGTTCTTCTCGAATGAACATTG TCGCTCCAGACCCCTTATAAGCCTTTTGACTGGAGTAAAGGGACCCCCTAGCCTTGAGGTGAAGGGGTTC AAAGACCCTTGCCTCCCTTCTGTACCTTATGGCAAAGGAGGTCGGGGTAAAGGGTCTCACCCTAGCTTCA GTTAAGGGGAGCCTTTGTTTATATTTCTGCCTTTTGGCCAGGTGACATGTTTTAATGGACCTTTTTTAAG GATTAGTCACACTTTGCGCTCTTTACACTTTGTGTTTTTGCACATTTGTTTGCACTGTGACTGTAATTGG AAGCATGCTCGGGCTTAAATAAAAAAAATCAGTTCAACCCCTGTCCTGATAATTTAGATTAGTATGTAAT CAACCTATGCATGGCTGATTGCCTTTAGAGGAGTTGGGGAGCTGTTCTGCAAGCAACACTGAAGTAGGAG AGAATTTCACACAAAGCCCAAATCCTGTTATTCCTTTGCAGTCTCTCCTCGGTATGTATTCAACTTGTCT CCTATACTGACTGCAAGAGAAAAGCATGTGACTCTTTTTCTTGTTGATGGACTATTCACAGAATTACATT TTGAACCTATTGTCAGGGCAGGGAAGGACTAGGGCATGCAACCTACAGGCTTGGAACTAACACTGTGAGC TGCTGTTTTGTGAACAGATAATATGGGCTGCCGTGGGCGTTGTTGAGTCAGAGTGAATGGCCTCTGGTTT CAGTCTTGGCTCCTCCTTTCCCACCCCTTCTCCCACCCCTCGCTGCCAGCAGCAATCTAGCTTGGAAACC GGACTGAGACCACCGGGCCCTGGACAAAGGAAAAAGCATTGGCGACCGAGTATGGCTGCAAGCAGATGGG CATTTATCCACTAAACATGATCCTCATCAGGGACTTCGGGTCTGATCAGCTCCCTACCACAAAGGCCTCC TTTTATCCTCCCCCATATTAATACTGTGGATTTGCCTTGACTCTGACTCCTTATTTATTTCCTACCCCAC TGGAACGCGCCCACGTAGGTATGTGGGGAAAGATGATTACGGATTACGGATCCGGATTCAACAGCTACCC CGCAGGTCTTTTTTAGCATCGGAACCGGATCAGTTGGAGAGCGAACCGGAGGATCACAGTTATCAGGGCA ATTTCAGCGACAAACACAAAGACAAATCCAAGGGCAAGATTTACACCCAGAGGGACCCGGTTTACACCCG CAGCTCCGGCAACAAACCAGAAGAGGTGGACGCCGGAAAAACACCAGGATATCAGGGGCCAAGAGATGGG AATCGCAACAGGAAGCCTCGGTGGTAATGTGTGCGGGGAGCTCCAGTTCATCGACAGTCCTTGGCAACCA CGTTCAACTTCCATCGCACTTGGATGTGGCTCTGATTTCTCCTCTGTGTGGATCTCTGGCTCTGATGCAC TGTGGCATTCTTCAGGAGCTTCTCACAATGGCAGAATAAGTCACACTCGGCGACTCAGCATAACATCTGA CAGTGGAGACACTGGTATAGGGACATCTTGCTCTGACAGCCTAGAAGATCATCCTACTTCCAGCAGTTCA TCAACATTAAAAAGTGCATACCCTTTGGGCTCCCTTACTGCAGCACATGGTATGCCCTCTACTCCCAGGT CTTCACTGTCCAGAACTAGAGAGGACAGACTGGACTCTTCACGTTGGAATAGCAATTACTCTTTACCAGC AGGGAGCAGACAGTATGGATTGTCTACTGACGCATCTCTTGATATGAAAGACTCAAGACCAATGAAAAAG TGGTCTTCATTGTCTAAACTCAGTGTACCTGATGGTCTCACTGTGGACAGCTGTTCAGAGAAAGCTGGCT CCAGACATAGCCTTGAACATGTTGGCAGAGACAGCACCATGTCTCAGCACTCCTGCAGGCACAGGACAAC CTGCCTACATCACAGCATGGAGCAGCTGAAGTTAGATGATAAAGACTCAGACAAAAGGCAGTATATGGGA ATTGATTGTAAATACAAGTACAATGCTTGCAACAGCAAAACACTTACTACTTCAGCTGTATCAAGTAGGA GACATACTTTGGACATGACTTATAGTGCCTTACCTGAAAGTAAACCATCCACTACTCTTAGTGAACCATA TGGGCAAAAATATAGCCATTATGCATACCAAGGTGGAGTTCCTATTCAGCCCTCTGTGAGGACTCAAATG TGGCTCACAGATCAGCTACATTCTAATTTCCAGGACCGCAGGCTGACTGATGATACATGTGTTATATCCA ATTGGCAGCCTCTTGAACAGCTCCGACAGGAAAAAGCCCAGCCACAGGTGGGCACCTGCTCTTCTCGTAT AGAATGTACGACCATGCCTTTAAGTCAGGATGTGACTAAGTGGGAATCCCTGATGAAAATTAAAGAAGGA CTATTGCGTCAGAAGGAGATTGTAATTGACAGGCAGAAGCAGCAGATCTGCCACCTACAGCAGGCGCTAA GAGGCAATGATTCTCAAGCTAACCAGGCCGTCGTGGGTCATGCCGTGAATGGAGAAGATTTTATGATGCA TCATCTCAAGGAAAACGGTAAATCTGAACATCACCCTTCCCTAGAAAGAACAAAGCCTCATTTAAAAGAT CAGGAAGATATTGAGAGGAAACTTGCTTGTGCTGAGACAGAGATTGTTCAGCTTCATGAGGTCCTGAACC AGAGCACCAGTAAAACCAGTGAAGATATCAAGAAGCTTGAGGACAAGATTAAAACAAGGGATAAGTATAT TAACAGCCTAAGGAAAAAATGCCAGAAAGAGAATGAATTAAACCGAGAGAAACAGAGGCGAATCGAAACC CTAGAAAAATATTTGGCTGACCTGCCTACCCTTGATGATGTACAGAAACAGAGTAAGCGGCTGCAGGTAG TTGAAGAAGAGAACAAGCAATTAAAAGAAACCATGAAGAACCTTGAGAAGCTCCTCAATGAGTCAAGAAC TCAGTGTGAAGAAAAAGATGCCCAGACAGATTGCCAGAAGCAAAGGGAAAAGGATCTGGTGATGACTGTT CAGAGCTTGCAGGAAAAAGTACAGAAATGTCTTGAAGATGGTGTACGACTCCCAATGTTGGATACCGCAC AGATGCAAAATGAAAATGACCGACTCAGAGAACAGAATGATCGAGCTAATAAGGTCATAGACAATCAGCA AAGTCAAATAGAGAATATGATTGCAGAAATTCAGGCATTGAGAGAGAAACTTTATCAAGAGCATTTGGCA GCGCAGGAGCTTGAAAAGAGGCTAGAAGAGAAAATGCACTGCACTCGGCAGCTAGAGGTTCTTTCTTTTG AACAAAACTTAAAAGAAGACAATGAGCGCATGAGAGGGCAAATAGAGGAAATGCAAATTTCCAGGCAGCC ATTATCAGATAAGATTCCAGTCGCTGAGCAGCTCTTCAAATTGATGTCCCACTGTCTGTTTGACTTGAAA GCACTTTGCAGTATACTAAATCAACGAGTCCATGGCAAGGAGCCAAACCTTTCTTTATTGCTAGGCATTG TATCTTTGAACAGCTCTTTTGAGGAAAATGAAGCCTGCCAGAGCACAGAGAGTCTAACCAAGAAACTGTC AGAAGCACATCAGCTACGGAAGGATATTGACGATCTAAGGACTATGCTATCAGATTGCTATGCTCAGGAC ATGGGAGACAATTGCATTACTCAGTGATCAATCCATATTTAGATTAAATGCTGCTTTTTTACAAATCTCT GCTTTTCTACTTGGGAGCCATAACAGAAACTACAACTTTACTATGCACATCAGATGCTTCTAACCCACCC ACTCCCTCTCTTTCCCTGAAGGAAAGAAGCATATTCTGGAATATACTTTCCCTCTTTTCTTATGGTTTTT AGATACTTCTGAATGTTTCCCTCACTTTGAATGTAGCGGTGGATTTTTTTTCCTACAAAATCCATTTGCA TTTATACATAGATAAAAAAAGCCTACAAAAAAGTAGGGATGCACCGAATCCACTATTTTGGATTCAGCCG AATACAGAAACTGAATCCTAATTTGCATATGCAAATTAGGGGTGGTTGCCCCTAATGTGCTTATGCAAAT CTGGATTTGGTTCGGCCGGGCAGAAGGAATAGGCCGAATCCTGCTGAAAAAGGCAGACTCCCCAACCGAA TCCTGGATTTGGTGCATCCCTACAAAAAAGTGCTGCAGGTGCAAGATGTCAAAAGAATTCCTTTTGCACC TACTCTCCTAGATGACTAAAGGAAAATTACACAGAATTGTTTTGCATTTTAGTTTTAGGAGTGAATTCTA AGTGTGATTGTGATTGAAGTGTGTACAGTTGTGCGATAGGTGAGGTGACGTCTAGTATTGTTTTTTTATG AGATGTGGATAGTGCAAAAACAAAATACTATGTTTAAAAAAAACTGAAATGTTAAATAGTTTTGAAGTAG TTACAAGTAGCAGGAATTAAGTTAATCAGGCTTTCTACTGGTCTACTGGTGTGGTGCTTAAATCAGGGGA TAAATCAGGGGATATATGTTATGGGATCCCAGTGTTTGATGTAGTTGTATCTTCTATCCCTTTTGGGTTT AATATTATGAACAAATTATTCAGTCTGATGCAGAACCCTGTACAAAGTTGGGTCATTAGCAGCTGAGGTT TACTATATATTGTGCTTGGTCTCAACCAGAGAATCTTCACTCACACACAGTATTTATTCCTGAATGTGAT TGTTTGCCTTTATTTTTGCTACAAAGTACAGCGTATATGGCCTGTAGCAAACACGATGCAGGAATATAGC TCCTTATAAATTGTAGAAAGTCATTTTCTGCATTTCCAAACACAGTTGGGGGGTCATTTATAAGAGTGGG CAAATTATGATGATTGTTTTCAGTGCTTAACCTGGAGCTGGCTGAAAAAAAGCTAATCACTGATTGGTTG CTATGGGTTACTGCCCAGGTGCAAATTTGCCCAGTGAGCCCCAGTGATCACTGCAATAAAACAATTGTAT GACTTACTACTACCTGGGACTGGTACTAAAAAGACCTGGCTTATATGCCATCAATAGAGAGGCTTGCAGA TCAAGTGAGACTGCTGATAAAAGGCTGATGAAAGCCCATCATGAGAATACCAACTTCTCCATTGTGTGCA AGATGCTCTTAAAAACATTTCTGTCAAGGTAGCATCATAATGGGTAATTTTCCTCATGGTTTAACTCGTA CAATTGTTGCAAATATCTTCCCATCATAGACTCTAACAGCAGCCCGTCTGTTTTGTTGCCGCTACATTCC TTGGAGATAAGTCAAACATATAGATTATAAGTTGGGGGGGGTTGCTGTTCCTCACTCTTAAAAAATATGA TTCTCCTATCCTGAAGGATAGTATAAAATGCTTTCTAAGAAAATGTGTCCTAAGGAAGCCATTATTGCCC TGTATTGCATTAAGTAAATACTTCAGAGCTAGTCTTACATTTCTCACAAACCCTATTGATCTGAAAGATA GCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds