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GEO Series: GSE118454

Title: Brief Local Application of Progesterone via a Wearable Bioreactor Induces Long-Term Regenerative Response in Adult Xenopus Hindlimb

Summary

The induction of limb repair depends on signals that initiate regeneration and the successful transmission of those signals in vivo. Here, we characterize the effects of an integrated device-based in vivo delivery of drug compounds in adult Xenopus laevis, which normally regenerate only a cartilaginous spike after limb amputation. A wearable bioreactor containing a silk protein-based hydrogel containing progesterone that was applied to the wound site immediately after hind-limb amputation for 24 hours induced regeneration of flattened paddle-like structures in adult frogs. Molecular assays (ELISA and NGS), Morphometric analysis (soft-tissue patterning), X-ray imaging (bone regrowth), immunofluorescence (cell proliferation, immune response, neuro/vascular tissues), and behavioral data (functional use of regenerates) were used to characterize the differences between the paddle-like structures and the hypomorphic spike observed in untreated animals. Initially, treated animals exhibited an extensive wound epithelium, and increased nerve supply compared to controls. Subsequently, flattened structures with robust bone remodeling were formed, resembling comparable tissues of adult limbs at the early and middle stages of regeneration. The limbs ceased regeneration at the position where the digits usually form. Functional tests revealed that the response to the paddle-like structures was similar to that of uncut limbs. Analysis of the blastema transcriptome identified a number of key genes related to the combined intervention, and also revealed regulated transcripts related to hormonal and neural pathways, representing novel targets for emerging regenerative therapies. Our experiments (1) establish a new model for testing of therapeutic cocktails in vertebrate limb regeneration; (2) identify pro-regenerative activities of progesterone, and (3) provide proof-of-principle of using integrated device-based delivery of small molecule drugs as a viable strategy to induce and maintain a regenerative response.


Contributors: Christopher Martyniuk, Celia Herrera-Rincon, Christopher Martyniuk, Mike Levin

Experiment Type: Samples from 3 treatment groups were RNA sequenced (Control, Sham or Silk, and Prog) via NGS, n= 9 per group, n=3 for three tissues (brain, stump, and blastema)

Experiment Reagents: progesterone.

Phenotypes:
Xla Wt + hindlimb amputation + sham + blastema adult (RNA-Seq (RNA))

Article: XB-ART-55432, PubMed

Source: NCBI GEO, Xenbase Download

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
blastema + hindlimb amputation - adult GSM3330455  GSM3330456  GSM3330457  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
blastema adult frog stage  
   blastema + hindlimb amputation + sham - adult DEG GSM3330437  GSM3330438  GSM3330439  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
blastema adult frog stage  
   blastema + progesterone + hindlimb amputation - adult DEG GSM3330446  GSM3330447  GSM3330448  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
chemical progesterone adult frog stage regenerating hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
blastema adult frog stage  
brain + hindlimb amputation - adult GSM3330458  GSM3330459  GSM3330460  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
brain adult frog stage  
   brain + hindlimb amputation + sham - adult DEG GSM3330440  GSM3330441  GSM3330442  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
brain adult frog stage  
   brain + progesterone + hindlimb amputation - adult DEG GSM3330449  GSM3330450  GSM3330451  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
chemical progesterone adult frog stage regenerating hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
brain adult frog stage  
regenerating hindlimb + hindlimb amputation - adult GSM3330461  GSM3330462  GSM3330463  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
regenerating hindlimb adult frog stage  
   regenerating hindlimb + hindlimb amputation + sham - adult DEG GSM3330443  GSM3330444  GSM3330445  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
regenerating hindlimb adult frog stage  
   regenerating hindlimb + progesterone + hindlimb amputation - adult DEG GSM3330452  GSM3330453  GSM3330454  RNA-Seq
Background: Xla.pigmentedNasco
Manipulations:
Manipulation Type Reagent Target Gene Stage Treatment Area
amputation/regeneration   adult frog stage hindlimb
chemical progesterone adult frog stage regenerating hindlimb
Conditions:
Tissue Assay Stages ChIP Antibody
regenerating hindlimb adult frog stage  
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