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GEO Series: GSE48560

Title: In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency.

Summary

We defined genome-wide regulatory inputs of the T-box transcription factors Brachyury (Xbra), Eomesodermin (Eomes) and VegT that maintain neuro-mesodermal stem cells and determine their bipotential fates in the Xenopus tropicalis frog embryo.


Contributors: George Gentsch, George Gentsch, James Smith

Experiment Type: Binding profiles for Xbra, Eomes and VegT in X. tropicalis embryos (ChIP-Seq)

Article: XB-ART-47416, PubMed

Source: NCBI GEO, Xenbase Download

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
input WE - NF20 GSM1180941  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 20  
   Xbra WE - NF20 GSM1180940  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 20 Tbxt Ab2
input WE - NF12.5 (vegt) GSM1180937  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
   vegt WE - NF12.5 GSM1180936  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5 VegT Ab1
input WE - NF12.5 GSM1180933  GSM1180939  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
   Xbra WE - NF12.5 GSM1180932  GSM1180938  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5 Tbxt Ab2
input WE - NF12.5 (xeomes) GSM1180935  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
   Eomes WE - NF12.5 GSM1180934  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5 Eomes Ab1
Select All DEG      Select All 
Xtr   
Xla 

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