XB-CLONE-3393911
Clone Name: IMAGE:7648974
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Gene:
plekha6
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC154100 [+]
CAGCTGGTATAGGGTGCTTTTTCGCCTTGGGCAGTCACAATGATCATCTTGCCACAGTCCAGCATTCAGTGACTGTACTGATCTCAAGAAAGAGTGGACC
ATTGTGGTTTGACATGAGTTCTGAAACATCTGGAAAGCGCTGTACGAGTCAAGTCAACGAAAGCTCTGCATTCAGTATGGTTTCTGACTCCCCTTTAGAA
GGCTCAATAATAAGGCCTTCACGTCTTTCAAAGAAAGGGATAGCATTTGGTAAACGTTCCAATTCAATGAAGAGGAATCCAAATGCTGAGGTAATGAAGA
CTGGCTGGCTCTACAAGCAGGCTAGCTCTGGTGTAAAGCAGTGGAATAAACGCTGGTTTGTCCTTGTTGATCGTTGCCTCTTCTATTACAAAGATGAAAA
AGAGGAAGTTATCTTGGGAAGCATTCCTCTTCTAAGTTTCTGTATTGCCCCTGTGCAGCCTTCTGATAACATCAGTCGTAAACATACCTTTAAGGCAGAG
CATGCTGGGATTCGAACTTATTTCTTTAGTGCAGAAAACAGAGAGGAGCAGGAGTCGTGGATATGCGTGATGGGGGAAGCATCACAGGTTCAAAACCTGG
CCACTCCTAGGATGGAAAAACAGGACAGTGAGAACATACCATCAACAAAAGATCGTGAACCTGAGACCAGAAGTCGTGGGGAGGGAGATGGGAGAGGTTC
TGAAAAATTTGAGAATAGGTCAGAATGCAAGCAGGAGTTTCTGACCAAAGTTAATGGGAGGGGGGTTCCTCCAGATAGACCCCCTGACCTGCAGCCACCC
AGGCACTTTCCTGAAGGGGAACAACCACCACAGCCCAATGGATGGGGTTTCCCCCCCTCTCCTGGCCGACCAGCAAGCACTGCCTTCTCAGAGGGCCAGA
GGCGTGGTAACCTACCCCGAACTCACCCAGAAAAGGTAGCACAGAGGCAAAACTCTATGTCACAACTACAGCAGTGGGTTAACTTAAGGAGGGCAGCAGG
TCCTACTGAGGAGATACAAAGCCCCAGCAGGTTCTTCTCAGAATCTCGCAGAATACCTGAATGTTACTCCCAATGCCCTTCTCAGTATCTTGATGGCTAC
CAATATTACAGCACACCTGCAGGATCACGGCCAGACAGTATCTGCTCAATGCCTATTTTTGACAGGGGAGTTCCGCAGTGGGGTGCAGAAGACAAAAGGC
AGATCCACCATAAACTAGTTCCTTATTACCCACGGGACTGGAATGAAGCTGGGAGCTATGGACGTCAGACTGAGATGTGGGTTCCCTGTCCACAACTGTA
TTACCAAGAAACAGATGCTGCATGTGAATCTCTTAGACATCTGTCATTACAGCCTCGCTCACGCTCAGTACCCCGTTCTAATAGTCAAGGAACCTACAAC
TACACACGCCCAAGGGTTTACTCTCCTGTCCGTTCCCCCAGTGCCAGGTTTGATGGCGTAACACGGGAAGATATTTTTGGAGACCCAGCAGCATATACCA
TGAGACGTTCAGTCAGTTCCCCAAAATATGGTTACATAGGAGACAGGCATCCTCATCAAGCTGGAGTGTATTCATACAGCTACCCTGCATCCCCCCCTCT
TCATGATAAAATGGATGAGATGTTAGATCTGCAGTTACAGAGGCACCTTGATTTTTTGGATCAGCAGATGAGTGAGAGTGAGACTCTGATCAGCATGGTG
AATAACATGGTACACTCTTCCCCCCGAGCACAGATCTTCATGCAAGTTTCTCCATACTCGGACCCATACAGAGAAGCACTGCAGAGCTACAAGATTAATG
AACACGACACAGATAAGCTCCTTGGTCAGCTATGCGAGCAGCACAAGGCAGTGAGAGAACAGGACCGCCTGGTACAGCAACTTAGAGCAGAAAAGGAGAG
TTTGGAGAGTGCTCTGATGGGGACCCACCAGGAAATGGAGATGTTTGGCAACCAGACAGCATTTCCAGAAAATCTGCTTCATCGGAAGGAATCCCTTCAA
AATCAGCTCATCAGCATCCGCGTTGAATTGTCACAGGCCACAACGGCCTTAAATAACAGCAGCCTAGAATATGAGGCTTTAGAGGGAGAGGTCTCTGCTT
TGCATGATACCCTGTGGGAACAGCTGAATCTCAATATACAGAATGAGCTTATGAACCGACAGATCCAGAGAGAGATTTGGAGGATTCAGGATGTCATGGA
GGGACTGAGAAAAAATAATCCATCCCGGGGAACTGACACGGCAAAGCACCGCGTATTGCCTGGACCCTCAGCTACCTTCAGCTCCAACAGCCCTGCAAGT
CCCATAAGCTCTGCTAGTCTTACAAGCCCCCTCAGTCCCTTTTCTCTCATCTCAGGATCACAAGGCTCCCCCACCAAGCAAACAACCAGTGAGGACTCTG
GCCCTCCACGGCCCCCTCTCCCTCTTTCGTACACACCTTTGGACTCTCCTTCAGATGTCCTTCCTCTCCCTGGGGAAGGTTGTTTCCAGCCTTGGCCATA
CCCCCTCTCTTCCTGCTGGCTGCACAGTGAGTTGAAGATGAATTTAGAACCATATAAAAGAGAATCACTCCAGCTTTCATCCTCGCTTACTCCTGAAAGA
TTACGTTCCCTTCAGTTTTGTTCTGAGCATGAGTCAGAGAAACAACAACAAGTACCTCTACAGGTCATTAACAAAGGAGCGGCCAAAGAGTGCATTATTC
CCCAGTGAAGTAAAGTCCAAGATGAGTGTCGAAGAGCAAAATGATAGGATGAAGCGTCACCAGACTGGATCAGTGAAAGAAAAGAGACGAAGCCTGCAGC
TCTTAGCTAACCAGCAGTCAGAACACAGTGCAACCAAATCAACTGGAACATACAGAATAGTACGCAGACATCGCAGTGTCCAGGAGGTTGATATATCAGA
CCTGGAAGCAGTTTTGCGTTCCCAGGAACCCCAGCATACATATGAATCCCCTCAAGATGAGATTGCCCGGCTTCGCAAGATGGAGGTGGAGCCACAATCC
TACAGTGTAGATATCACCAGAGAGCTTCCTGTCCCAGACAAGCTTTCAACCCCAGAGAAAGTGCTGATCCCAGAGCGTTACATAGAATTGGAACCAGAAG
GCCCACTGAGCCCAGAGGAAATGCAGGAAAAAAGGAGGAAGGTGGAAAGAATCAAGACGCTGATTGCAAAATCCAGCTTACAGAACGTGATCCCACTAAG
TGACTCGGAACTAGAAGTGACCCCTGATCCTGAGTCCCAGCTTCAGGAGCAAGAGAAACGAATAGAGTTATCTTGCACGCTGGCTGCAGAAGCTTCACGT
CGTGGGCGTCTCCTCTCTGCACAGGCCAGAAATCTTGCAAAACTACACAAAGACTAGTTCCACATACACACTCCAGCTGTTCTGACAATGCCAGAAGATT
TCACCTCTCCTACCAAATACAGACATCACCATTTAAAGAGAAAAGAAGAAAGATTCTCAACGGATGAAGATTAGCGCATCATGGTGGAAGCCAGACTGTC
CTAGTCTGATATATATTTAAAGCACTGATTTTGCAACCAAGTGGAGAGAAACTGTAGAATGATATTAGTTGGCAATTATTAAAATATTGCATGACCAAAA
CTAAGGAATTTCCCCAGGGCTGTAAAGCCAGAGCCATTGAAACTACTTTGTACCAGACAATCATTTCTGTTAAGGTAGTCTATGGTCTTTTTTAAAGTGA
CTTTCACTAGAGAGTTGTCACAGTATTGCTTAACATTTAGAAACACATATTTTCTGGACTTTAAATTACTTTTAAACTAAGCCACCAAAGCATTTTCTTG
CACATGCATTATTTGTCATATACAGTGCTTGAATTAGCCTGTTTGCCAATTTCTTTCTCCCCCATGGGTTTCTTCTTCTTGTCAACTGTTGCAGACTTCT
GGGGGAGGAATTAATCCTCCAGCAGCTCAGAGCACTCCAATGGCCCACCTTAACCCCCCCCCATAAAAAAAAAAAAAAA
Full length sequence: MG136508.1 [+]TGAGTTCTGAAACATCTGGAAAGCGCTGTACGAGTCAAGTCAACGAAAGCTCTGCATTCAGTATGGTTTCTGACTCCCCTTTAGAAGGCTCAATAATAAG
GCCTTCACGTCTTTCAAAGAAAGGGATAGCATTTGGTAAACGTTCCAATTCAATGAAGAGGAATCCAAATGCTGAGGTAATGAAGACTGGCTGGCTCTAC
AAGCAGGCTAGCTCTGGTGTAAAGCAGTGGAATAAACGCTGGTTTGTCCTTGTTGATCGTTGCCTCTTCTATTACAAAGATGAAAAAGAGGAAGTTATCT
TGGGAAGCATTCCTCTTCTAAGTTTCTGTATTGCCCCTGTGCAGCCTTCTGATAACATCAGTCGTAAACATACCTTTAAGGCAGAGCATGCTGGGATTCG
AACTTATTTCTTTAGTGCAGAAAACAGAGAGGAGCAGGAGTCGTGGATATGCGTGATGGGGGAAGCATCACAGGTTCAAAACCTGGCCACTCCTAGGATG
GAAAAACAGGACAGTGAGAACATACCATCAACAAAAGATCGTGAACCTGAGACCAGAAGTCGTGGGGAGGGAGATGGGAGAGGTTCTGAAAAATTTGAGA
ATAGGTCAGAATGCAAGCAGGAGTTTCTGACCAAAGTTAATGGGAGGGGGGTTCCTCCAGATAGACCCCCTGACCTGCAGCCACCCAGGCACTTTCCTGA
AGGGGAACAACCACCACAGCCCAATGGATGGGGTTTCCCCCCCTCTCCTGGCCGACCAGCAAGCACTGCCTTCTCAGAGGGCCAGAGGCGTGGTAACCTA
CCCCGAACTCACCCAGAAAAGGTAGCACAGAGGCAAAACTCTATGTCACAACTACAGCAGTGGGTTAACTTAAGGAGGGCAGCAGGTCCTACTGAGGAGA
TACAAAGCCCCAGCAGGTTCTTCTCAGAATCTCGCAGAATACCTGAATGTTACTCCCAATGCCCTTCTCAGTATCTTGATGGCTACCAATATTACAGCAC
5' EST: CX808671 [+]ggtatagggtgctttttcgccttgggcagtcacaatgatcatcttgccacagtccagcattcagtgactgtactgatctcaagaaagagtggaccattgt
ggtttgacatgagttctgaaacatctggaaagcgctgtacgagtcaagtcaacgaaagctctgcattcagtatggtttctgactcccctttagaaggctc
aataataaggccttcacgtctttcaaagaaagggatagcatttggtaaacgttccaattcaatgaagaggaatccaaatgctgaggtaatgaagactggc
tggctctacaagcaggctagctctggtgtaaagcagtggaataaacgctggtttgtccttgttgatcgttgcctcttctattacaaagatgaaaaagagg
aagttatcttgggaagcattcctcttctaagtttctgtattgcccctgtgcagccttctgataacatcagtcgtaaacatacctttaaggcagagcatgc
tgggattcgaacttatttctttagtgcagaaaacagagaggagcaggagtcgtggatatgcgtgatgggggaagcatcacaggttcaaaacctggccact
cctaggatggaaaaacaggacagtgagaacataccatcaacaaaagatcgtgaacctgagaccagaagtcgtggggagggagatgggagaggttctgaaa
aatttgagaataggtcagaatgcaagcaggagtttctgaacaaagttaatgggaggggggttcctccagatagaccccctgacctgcagccacccaggca
ctttcctgaaggggaa
3' EST: CX808670 [+]tttttttttttttttatgggggggggttaaggtgggccattggagtgctctgagctgctggaggattaattcctcccccagaagtctgcaacagttgaca
agaagaagaaacccatgggggagaaagaaattggcaaacaggctaattcaagcactgtatatgacaaataatgcatgtgcaagaaaatgctttggtggct
tagtttaaaagtaatttaaagtccagaaaatatgtgtttctaaatgttaagcaatactgtgacaactctctagtgaaagtcactttaaaaaagaccatag
actaccttaacagaaatgattgtctggtacaaagtagtttcaatggctctggctttacagccctggggaaattccttagttttggtcatgcaatatttta
ataattgccaactaatatcattctacagtttctctccacttggttgcaaaatcagtgctttaaatatatatcagactaggacagtctggcttccaccatg
atgcgctaatcttcatccgttgagaatctttcttcttttctctttaaatggtgatgtctgtatttggtaggagaggtgaaatcttctggcattgtcagaa
cagctggagtgtgtatgtggaactagtctttgtgtagttttgcaagatttctggcctgtgcagagaggagacgcccacgacgtgaagcttctgcagccag
cgtgcaagataactctattcgtttctcttgctcctgaagctgggactcaggatcaggggtcacttctagttccgagtcacttagtgggatcacgttctgt
aagctggattttgcaatcagcgtcttgattcttt
Library:
Description: PolyA+ RNA was primed with oligo-dT primer 5'-GACTAGTTCTAGATCGCGAG CGGCCGCCCTTTTTTTTTTTTTTT-3'. cDNA was ligated to SalI adapter (5'-TCGACCCACGCGTCCG-3' and 5'-CGGACGCGTGGG-3'), digested with NotI, size fractionated in 1.1% agarose gel electrophoresis and ligated into SalI and NotI digested pCMV-SPORT6 vector. Library contains the 0.5-1.5 kb size fraction (additional size fractions contained in the NIH_XGC_tropBrn3 and Brn4 libraries). Library constructed at the DOE Joint Genome Institute.Anatomy: brain | Stage: frog |
Normalized: No | Subtraction: No |
Vector Details | Vector Map |
Name: pCMV-SPORT6
Type: phagemid
5' Restriction Site: SalI
3' Restriction Site: NotI | |
Usage:
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