XB-CLONE-3309917
Clone Name: IMAGE:7655302
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Gene:
scaper
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC167642 [+]
ctgctgggaactcaattactatagcatcatttcaacgatccaacagtcacgacaaggtgagaaaaattgtggcagaggaaggacgtacagccaggaactt
aattgcatggagtgttcctttggaaagcaaagaagatgaaggaaaagcaaaatggccatgtgggaaatctaagaggggaattcatggtacacacaaatca
tccaaacagaataacacattacactgtaaagtaaattcaagctccaccagcgataaaattcaagacaagagtcctaccaagacaaggcatcctcgtaaag
tagatctgagggcacgttactgggcttttcttttcgacaatctgagaagagccgtggatgaaatttatgtgacatgcgaatcagaccaaagtgttgttga
atgcaaggaagtgcttatgatgttggggaactacgtgagagattttaaagcccttattgattggatacaactgcaagagaagctagagaagactgatgca
cagagcaggccaacctctttggcgtgggaagtgaaaaaaatgtccccagggcggcatgttatgcctagtccttcatctgagagagtgagctctacgtcga
ctgcccggaggacccttaattttggggggcctacacttaacatgtcttcaagtcgcctgactccatcaggagtaagctgggctgacaaagttaaagcaaa
ttacaacaactctgcatgcagtgaagatacagaaagtctacattcatatgttcctacagttggacaaaaggtggtccctgataatgatcgaatggatgcc
gaaggctgggaaactgttcagcgtgggaggccaattcgatcaaaatctgctgcaatggcacacaagccttctcttcctgcagccatggaaaacagggcaa
aagatgatagtgataaagagaatgtatgttccaaatcctcagaagagattccagatgtgatccagaaatcggagctccctcctgtgcttgtggaccctcc
atctaaggagttgctatgcccatgtgaaattcctttggctgaaataactcagattactgttcacaatgctctagaagaactaaagccagtaggaacatgc
ccatctcaagagactacctcacttaaatgtctggacattcctgttgtgtttcttgaccccctatctaaaatgcagaagacagaggtgcccttcatgacag
atgcagctcgagggggaaggaagacaggcagtgatctagacctttcaaacgtaaactctttgtatcatttgagctgcagctgttagtcaaagaactgatt
cagattttacttatgtgaaaggatcagaataattcatacatttgtcattcgatctagtgcttgaaatttctgtctgcctactaatgcatgtaacatatca
gtctgtaaactgtatttatgtcttaaatggcaatcgcatcattatcataatccaacgctactcattttctattatgtattgcggtgcagattttttaatg
ccataaaaatcatgaacatctgacacatattctctgcatctgtaggtgttccaattctgttctgtttttttttttttttgtaattccctgcaagctgtag
aaagaagtccttatagtattaaagaatcactaaaatgagagagagtgcatttacacattctgtgcaatgctgcaataaagtgagcaccatttcaggaaga
atgatgcttgtatttgaaaatgctgatagattttgtgactgggcatttatggccatttcaagagctgatagcaaggacactgcaatacaattagaaattc
ttattaaaagaaaagattctgacctgagcaggagctaaatatctagtgttaatcttaatatatagttgttgttgttatttgtctattaaatgaaaacgaa
agcacacaaaaattatatataggtagtaatactggattttatttcctaaactgtagaaggccaagattcagcaactctaaaacagtaatgattcatgcct
tcaaagttgtccacagctacacttaggagtcataggagatcaacaaaactttaccagaaagtgaagtttaatcatataagttgatttcagatgcataagc
aattgatttctatggtgtcatgtaatgtgaatcttaaatactaaatagtattttgtcgtgagtcttaaatgttatatataatttatatggcgagctgtaa
cctatgcttagttaagtgacacaaaaacatgtagtttttctaaagggcaacttcttggcggtgctgttgtgtctttttagcagcaatatgtgacaaatag
agcaacacacacaaattgcaaactgggtgtttaaccaatttattcaaccatgaacctctacagcagaattttggggtaattagtaccttttgtcaggatg
cattgtactgtatttatgtttaattatatttaatcatgtcaaattgctgtccattgcaaaactaagaaatagttccctagtgataagtgaaactgcccca
tttcgctttgccaattaatatgagttaccagggaaaaaggtttaaaatcgtgttaaatgcattggaattaatctcaatggtttttcttgcatcaaatgca
ttgctgtagtaaaccatttaagttctcaacttactatcacccatatcgtaacaggtcacccaacagaacacatataaattaaaaaatgaaagtggtcctt
aaatattaaaaattataacagagcaaaaacattaggtactactggtgatcattgcctaaactctgaagaacagtattatgtgcagggtcactttaaggta
ccaccaggcccagggcaaaatttagtgggcccccactgccccaagaaatttttgatagaataacccttaagcatgtgaagttcaataaagtaaggcaggc
aacgaagcaccggtatgtgcttactgaagtagacatgatgcccaagtgtgctgcctggaccaacagccctgggagcataaatgacaatccagttgattaa
aatgaggggcctgccatttctgcaggatgcttctgccagaagttatcccagatgaaatatatgctggtgggccctgggcaaatactccttatgcccgttt
attaaatcagccctgagtatatgcactgactattgctttactgtattcctaaatacagagaaacgcaagtgtggccataaccaaccagcacttttctgtg
caacttggtttggaagtttgtatttctggttagctactgtatgtgcattatggatcattccccattgagcaggaaagaaaattctgatgagctatgtaaa
gcagtggtatcatacagattgtctgcttcttatgtctgtctccccaaattaatggcatgcccccccgccttttctccaggatctttcacgtttgcaaaag
accattttaaaatgtgtcccaaatcctcaaattaagcttttattttccattgttttcatatttatatgtgtcttaaaaaattgttttgttttatgtgtta
aacctgggtggtcattggtatgtagcaaactgtactacatactttgatgttgctcatttaaagtaggtttttgggcaatgagaccttacagaccatacca
gtttttgaacccaaccagtatttgctgatgggtaaatcaagactttttgatatagtcttttttataaccatgttttgcggccctgatttgcggcactcct
ttttctctgatttgctcacagtccatggcagaagttcttgctaagaaagaagagctagcagatcgattggagaaggccaatgaagaagctatagcaagtg
ctattgcagaggaagagcaactgacaagggagatcgaggcagaagaaaacaatgacattgagattgacaatgaaagtgacttctctgctagcattggcag
tggaagtgtgctttacaatggcatgtccatggactggaatgaagtattagcagattatgaagccagagaatcatggagacagaacacatcctggggggat
atggtggaggaagagccttcaaggccacctggacatggaatacacatgcatgaaaaactttcttccccatcccgaaagagaactattgctgaatcaaaaa
agaagcatgaggaaaaacagctgaaagctcagcagcttagagaaaagcttagagaagagaaagcactcaaactacaaaagttgcttgaaagggagaaaga
tgtacgaaaatggaaagaggggttattagagcagaggcgcaaaatgatggatgagaaattgcttcatgctgagtttaagagggaggtgcagttacaggca
atagtgaaaaaggctcaggtagaggaagcaaaggtaaatgaaatagctttcatcaataccttggaagctcagaataagcggcatgatgtccttgcaaagc
ttaaggaatatgagcaacggctgaacgagctgcaggaagagagacagcggagacaggaagagaaacaagcaagggatgaagctgtgcaggaacgcaaaag
agccttggaagctgaacgacaggcacgtgttgaagagttattaatgaagaggaaggagcaagaagctcgtatagagatgcaaagacaagaaaaagagcgg
gctcgagaggatgcagccagggagagagctagggatagagaagagagattggcagctttgacagcagctcagcaggaagcaatggaggagctccagaaaa
agatccaactcaagcatgatgaaagtgttcggaggcacctggagcagattgagcagaggaaggagaaagcggcagagctgagcagcggcagacatgcaaa
cacagactatgcacccaaactcaccccatatgagcgcaagaaacagtgcactttatgctgtgtcacgatttcctctgaagtttatctcttcagccacatt
aaaggaaaaaaacaccaactagcagtaagagaaaacagcagcatccaaggcagggaactgtccgacgaggaagtggagcatttgtccctgaaaaaataca
ttgttgatattctgatggaaacagctgttcccttggagcctataaaagatggagaggagaagcaaaaaaaaaaaaaaa
5' EST: CX825399 [+]ctgctgggaactcaattactatagcatcatttcaacgatccaacagtcacgacaaggtgagaaaaattgtggcagaggaaggacgtacagccaggaactt
aattgcatggagtgttcctttggaaagcaaagaagatgaaggaaaagcaaaatggccatgtgggaaatctaagaggggaattcatggtacacacaaatca
tccaaacagaataacacattacactgtaaagtaaattcaagctccaccagcgataaaattcaagacaagagtcctaccaagacaaggcatcctcgtaaag
tagatctgagggcacgttactgggcttttcttttcgacaatctgagaagagccgtggatgaaatttatgtgacatgcgaatcagaccaaagtgttgttga
atgcaaggaagtgcttatgatgttggggaactacgtgagagattttaaagcccttattgattggatacaactgcaagagaagctagagaagactgatgca
cagagcaggccaacctctttggcgtgggaagtgaaaaaaatgtccccagggcggcatgttatgcctagtccttcatctgagagagtgagctctacgtcga
ctgcccggaggacccttaattttggggggcctacacttaacatgtcttcaagtcgcctgactccatcaggagtaagctgggctgacaaagttaaagcaaa
ttacaacaactctgcatgcagtgaagatacagaaagtctacattcatatgttcctacagttggacaaaa
3' EST: CX825398 [+]ctcctctccatcttttataggctccaagggaacagctgtttccatcagaatatcaacaatgtattttttcagggacaaatgctccacttcctcgtcggac
agttccctgccttggatgctgctgttttctcttactgctagttggtgtttttttcctttaatgtggctgaagagataaacttcagaggaaatcgtgacac
agcataaagtgcactgtttcttgcgctcatatggggtgagtttgggtgcatagtctgtgtttgcatgtctgccgctgctcagctctgccgctttctcctt
cctctgctcaatctgctccaggtgcctccgaacactttcatcatgcttgagttggatctttttctggagctcctccattgcttcctgctgagctgctgtc
aaagctgccaatctctcttctctatccctagctctctccctggctgcatcctctcgagcccgctctttttcttgtctttgcatctctatacgagcttctt
gctccttcctcttcattaataactcttcaacacgtgcctgtcgttcagcttccaaggctcttttgcgttcctgcacagcttcatcccttgcttgtttctc
ttcctgtctccgctgtctctcttcctgcagctcgttcagccgttgctcatattccttaagctttgcaaggacatcatgccgcttattctgagcttcaagg
tattgatgaaagctatttcatttacctttgcttcctctacctg
Library:
Description: PolyA+ RNA was primed with oligo-dT primer 5'-GACTAGTTCTAGATCGCGAG CGGCCGCCCTTTTTTTTTTTTTTT-3'. cDNA was ligated to SalI adapter (5'-TCGACCCACGCGTCCG-3' and 5'-CGGACGCGTGGG-3'), digested with NotI, size fractionated in 1.1% agarose gel electrophoresis and ligated into SalI and NotI digested pCMV-SPORT6 vector. Library contains the 1.5-2 kb size fraction (additional size fractions contained in the NIH_XGC_tropBrn2 and Brn4 libraries). Library constructed at the DOE Joint Genome Institute.Anatomy: brain | Stage: frog |
Normalized: No | Subtraction: No |
Vector Details | Vector Map |
Name: pCMV-SPORT6
Type: phagemid
5' Restriction Site: SalI
3' Restriction Site: NotI | |
Usage:
Suppliers: