XB-CLONE-3257426
Clone Name: IMAGE:7794190
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Gene:
upf2
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC166247
[+]
tcctgacaaagatatggaataagcgcaacgaaattcattcttttgctagaacggcagtgatatggccgtcctcggtgctgggtcttctagacggaattgt
gctgggaacggagtgtttacaaattaaaaggattctttttacaaataatgccagcagaacgcaagaaaccagcaggtatggaagaaaaggaatctccatc
tagcccaagggacaaagaatgtgctgagaagaaatctacaagcagcaaagatcgggttaaggaagaaccaaaagcaagcaccaaaagagatcaatcaaag
gcttctgaggaaaaaaagaagcgaactgatgaggacaagcggaaaaaagaggagaaggagtgcaaaagaaaggaggatgatcaagtcaaagcagatgatg
agcagcaaagttcagagggaaaaaatcaagaagatgaaataaaaaagaagcaggaagaagaggaagctcatcagagagaagctgcagcattacacatcaa
agagaaggatgaagcaaatcagttacaccaagaagcatgggaacggcaccacactaggaaggagcttcgtagcaaaaatcaaaatgcccctgaaaatcga
cctgaggagagtttctttagcaggctggactctagtttgaagaagaacactgcttttgtgaagaaactcaaaaccattactgaacagcaaagagattcat
tgtcccatgacttcaacagccttaacctcagcaagtacatagcagaggcagcagcctccattgtagaggccaagttaaaaatatctgatgttaactgtgc
tgtgcatctgtgttctcttttccaccagcgatatgctgactttgcacagtctctccttcaggtatggaagaagcattttgaagcccgcaaagaggaaaag
actcctaatattactaagctgagaacagacttgcgctttattgcagagctaaccatcattggcatctttactgataaagaaggcctctctctaatttatg
agcaacttaaaaacataattaatgctgatcgagaatcccacacacatgtttcagtagtaatcagtttttgccggcactgtggagatgatattgcaggctt
agtgcccaggaaagtgaagtgtgcagctgaaaaatacaatcttaattttcctcctagtgagattatcagcccagagaaacaacagcctttccagaatttg
ctgaaagagtatttcacatctctgacgaaacacttgaagagggaccacagagaattacaaaatatagagcgccagaacaggcgcattcttcacactaaag
gggagctaagtgaagacaggcacaagcaatatgaggagtttgcaacatcttatcagaagctgttagctagctgtcaatcacttgcagatctgctagatga
aaatatgccagaacttcctcaggacaaacctgctccggaggaacatgggcctggtattgatatcttcacacctggaaaacctggagattatgacttagaa
ggaggcatttgggaagacgaggatgcccgtaacttttatgagaatctgattgatttgaaagcttttgtcccagccattttatttaaggataatgagaaaa
attctcagagtaaagaaactggcaaagacagtttcaaagatagtaaagagaaagatgtgtccacaactgaagagctagagctggagttagagacattgga
tattaatgatgaaggcatggaactggaaggtgccgaagatgcagaagacctaacaaaaaaacttttggatgaacaagagcaagaagatgaagaggcaagc
acaggctcccatttaaaactcattgttgatgcttttattcagcagctgccaaactgtgttaatcgtgatctaatagataaggctgcaatggatttttgca
tgaacatgaatacaaaagctaatagaaggaaattggtcagagcactattcattgttcccagacaaagactggatcttcttccattctatgccagattagt
ggccaccttgcatccttgcatgtctgatgttgcagaagacctttgttccatgttaaagggagactttcgtttccacgttagaaagaaggatcaaatcaac
attgaaacaaagaacaagactgtgagatttattggagaacttgccaaatttaaaatgttcagcaaaacagatacgctgcattgtttaaagatgctgttgt
cagacttttcgcatcaccacatagaaatggcatgcactctactggaaacttgtggcagatttctttttcgatctccagattctcacttgcgcaccagtgt
cctgctggagcaaatgatgcgcaagaagcaagcaatgcacttagatgcacgctatgttacaatggttgaaaatgcctactattactgtaacccacctcca
gctgaaaaaactgtgaaaaagaagcgacctccactacaagaatacatcagaaagcttctttataaagacctttccaaggtcaccactgaaaaggttttga
ggcagatgaggaagctgtcttggcaggatcctgaagtgaaggactatgtaatttgctgcatgatcaacatctggaatgttaaatacaacagcattcattg
tgtagccaatcttttggcaggactggtactttaccaagaggatgttggaatacatgttgtagatggagtgttagaagatatacgtcttgggatggaggtt
aaccagccaaaatttaatcagcggaggataagcagtgcaaagttccttggggagctttacaactatagaatggtggaatctgcagttatatttcgcacac
tttattcatttatttcctttggtgtaaattctgatggaagccccagcccacttgatcctcctgaacacttgttccgcattcgattagtttgcactatcct
tgacacttgtggccagtattttgaccgtggatcaagcaagagaaagcttgattgttttcttgtttattttcagcgctacgtttggtggaagaaaagtctt
gatgtgtggactaaagaccacccatttccaatagatattgattatatgataagtgataccttggagcttctgaggccaaaaatgaagctctgtgcctcac
tgaatgaatctgtccgccaagtgcaggatttggagcgtgagtttctgacaaagctaggtctcatgaatgataaggaatccaaacattccatgacagaagg
agatcacctagtgtatgaagatgatgatgaggaagaagaggctggggcagagacagaggagcagtctggcaatgaaagtgaaatgaatgaacaagaagaa
gatgcttctgaaaatgaagaggatgaaagagaggaggaagaagaggagaatacagattatatgactgactcaaacaaagaaaatgaaacagatgaagaaa
acactgaggtgatgattaaaggaggtggaattaaacatgtaccctgtgctgaagatgaagactttattcaagcccttgacaagatgatgctggaaaatct
tcagcaacgtagtggagagtcagtgaaggtgcatcagttagatgttgctattcccctgcatcttaagagccagcttaaaaagggaccagctatgagcact
ggagaagtagacccggaatctggcgacactatgccatttgttatgcttacaagaagaggtaacaaacagcagttcaagatccttaatgtgcctatgtcct
cccaactggctgcaaatcactggagtcagcagcaagctgaacaagaagagaggatgaggatgaagaaactcacattagatatcaatgagcgtcaggaaca
agaagattaccaagaaatgttgcagtcattggctcagcgcccagcacctgccaacacaaacagggagcgcaggcctcgataccagcatccaaagggagca
cctaacgcagacctcatcttcaaaactgggggcaggagacgttgatccagcacagtcattccattgggccctgtgtcttcaacatggctagtgtaaacct
ccagaaattgtaaaagatcagcagcacatcgcagcatgttcagaacagaaggttgggatggaatcctgtgacagggcttgggagcaaggcgaagacagca
ataccagcttctgcttcagacagaaagaagcttcaagcgtaggcaccactgacacacaaacagtggggccctttttgtatctgcaaaaacgctcaagaca
gccttacattggatggaaagcattaagagggtttactttattagcaggcagtttggctaaaagtagacagaagtttcctttaagatggacatgcattgca
actgtattgtagttttgcactgttagaaggatccagcgaaaagatgtaggactggacgtcacactttgaaagaacacagagttgcaaaacaatagccaat
atggcacaaaggggcaaaaagctggaaacgttgaacacaggaagtcagacaaatctggagtgcaacaaatactcctaagaagattttttgtttaaaatgt
gtttgctttttctctgtaatagtacagtgtaaaatggaaagacactgtgccttttggcaaatgccagagcagactgggcttctttggctgtgcatagaat
ttgccaaaatttgtatagagctaaaatgtgcagtttgcatttctcttccattcctataccagctgaacacaagaactggccagactaccaacgtatgctc
tattttggcttctcaacatttagcctgttgcaggattacagctaagtactagagtaaggagtgaagcagttagtgatgttacctttaaaggctagctctt
tggtatttacaagtttaatttgataagtaacagatttatttttcccaatttttccatctgccaagtaaataaaacctttttctgttaaaaaaaaaaaaaa
aa
5' EST: CX907252
[+]tcctgacaaagatatggaataagcgcaacgaaattcattcttttgctagaacggcagtgatatggccgtcctcggtgctgggtcttctagacggaattgt
gctgggaacggagtgtttacaaattaaaaggattctttttacaaataatgccagcagaacgcaagaaaccagcaggtatggaagaaaaggaatctccatc
tagcccaagggacaaagaatgtgctgagaagaaatctacaagcagcaaagatcgggttaaggaagaaccaaaagcaagcaccaaaagagatcaatcaaag
gcttctgaggaaaaaaagaagcgaactgatgaggacaagcggaaaaaagaggagaaggagtgcaaaagaaaggaggatgatcaagtcaaagcagatgatg
agcagcaaagttcagagggaaaaaatcaagaagatgaaataaaaaagaagcaggaagaagaggaagctcatcagagagaagctgcagcattacacatcaa
agagaaggatgaagcaaatcagttacaccaagaagcatgggaacggcaccacactaggaaggagcttcgtagcaaaaatcaaaatgcccctgaaaatcga
cctgaggagagtttctttagcaggctggactctagtttgaagaagaacactgcttttgtgaagaaactcaaaaccattactgaacagcaaagagattcat
tgtcccatgacttcaacagccttaacctcagcaagtacatagcagaggcagcagcctccattgtagaggccaagttaaaaatatctgatngtaactgtgc
tgtgcatctgtgttctcttttccaccagcgatatgctgactttgcacagtctctccttcaggta
3' EST: CX907251
[+]ttttttttttttttttaacagaaaaaggttttatttacttggcagatggaaaaattgggaaaaataaatctgttacttatcaaattaaacttgtaaatac
caaagagctagcctttaaaggtaacatcactaactgcttcactccttactctagtacttagctgtaatcctgcaacaggctaaatgttgagaagccaaaa
tagagcatacgttggtagtctggccagttcttgtgttcagctggtataggaatggaagagaaatgcaaactgcacattttagctctatacaaattttggc
aaattctatgcacagccaaagaagcccagtctgctctggcatttgccaaaaggcacagtgtctttccattttacactgtactattacagagaaaaagcaa
acacattttaaacaaaaaatcttcttaggagtatttgttgcactccagatttgtctgacttcctgtgttcaacgtttccagctttttgcccctttgtgcc
atattggctattgttttgcaactctgtgttctttcaaagtgtgacgtccagtcctacatcttttcgctggatccttctaacagtgcaaaactacaataca
gttgcaatgcatgtccatcttaaaggaaacttctgtctacttttagccaaactgcctgctaataaagtaaaccctcttaatgctttccatccaatgtaag
gctgtcttgagcgtttttgcagatacaaaaagggccccactgtttgtgtgtcagtggtgcctacgcttgaagcttctttctgtctgaagcagaagctgga
attgctgtcttcgccttgctccccagccctgtcacaggattcatcccaacttctgt
Library:
Description: PolyA+ RNA was primed with oligo-dT primer 5'-GACTAGTTCTAGATCGCGAG CGGCCGCCCTTTTTTTTTTTTTTT-3'. cDNA was ligated to SalI adapter (5'-TCGACCCACGCGTCCG-3' and 5'-CGGACGCGTGGG-3'), digested with NotI, size fractionated in 1.1% agarose gel electrophoresis and ligated into SalI and NotI digested pCMV-SPORT6 vector. Library contains the 0.5-1.5 kb size fraction (additional size fractions contained in the NIH_XGC_tropTe4 and Te5 libraries). Library constructed at the DOE Joint Genome Institute.Anatomy: testis | Stage: |
Normalized: No | Subtraction: No |
Vector Details | Vector Map |
Name: pCMV-SPORT6
Type: phagemid
5' Restriction Site: SalI
3' Restriction Site: NotI | ![Expression Image Expression Image](image/thumbnail/XB-IMG-41414.jpg) |
Usage:
Suppliers: