Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.
Search High Throughput Sequencing Data (RNA-Seq, ChIP-Seq, etc.)

Keyword/ID:
Species:

Experimental Conditions*

Gene Manipulated:
Treatment Area:
Stage: From: To:
Manipulation Type:

Assay*

ChIP-Seq Antibody:
Tissue:
Stage: From: To:
Assay Type:
*Suggested terms will appear as you type, but only for matches in the GSE dataset.

GSE Search Results:

???pagination.result.count???

???pagination.result.page??? 1 2 ???pagination.result.next???

GSE Title Assay Types Article
Sample
GSE14952 High-throughput sequencing of small RNAs from Xenopus tropicalis RNA-Seq XB-ART-40115
Select All 
Xtr   
Xla 
 
GSE19173 Xenopus egg small RNA associated with Y12 antibody RNA-Seq XB-ART-40809
GSE30067 Deep sequencing of small RNAs in the Xenopus tropicalis gastrula RNA-Seq XB-ART-43632
GSE30146 HEB and E2A function as SMAD/FOXH1 cofactors ChIP-Seq XB-ART-43683
  
GSE33444 miR-124 acts through coREST to control the onset of Sema3A sensitivity in navigating retinal growth cones RNA-Seq XB-ART-44540
GSE37452 RNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. RNA-Seq XB-ART-45933
Select All 
Xtr   
Xla 
 
GSE38605 Genome-wide small RNA profiling and mRNA profiling of Xenopus embryos RNA-Seq XB-ART-47876
Select All 
Xtr   
Xla 
 
GSE41161 Principles of nucleation of H3K27 methylation during embryonic development ChIP-Seq XB-ART-47807
  
  
  
Select All 
Xtr   
Xla 
 
GSE41338 The evolutionary landscape of alternative splicing in vertebrate species RNA-Seq XB-ART-46474
Select All 
Xtr   
Xla 
 
GSE43520 The evolution of lncRNA repertoires and expression patterns in tetrapods RNA-Seq XB-ART-54076
Select All 
Xtr   
Xla 
 
GSE43652 A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development RNA-Seq XB-ART-47572
Select All 
Xtr   
Xla 
 
GSE45786 Cardiac transcriptome of Tcf21-depleted Xenopus embryos RNA-Seq XB-ART-47035
  
GSE48560 In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency. ChIP-Seq XB-ART-47416
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE48663 In vivo T-box Transcription Factor Profiling Reveals Joint Regulation of Embryonic Neuro-mesodermal Bipotency RNA-Seq XB-ART-47416
  
GSE50593 Coordinated genomic control of ciliogenesis and cell movement by Rfx2 RNA-Seq ChIP-Seq XB-ART-51735
  
  
GSE52809 Poly(A)-tail profiling reveals an embryonic switch in translational control RNA-Seq XB-ART-48919
Select All 
Xtr   
Xla 
 
GSE53652 Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq] ChIP-Seq XB-ART-49634
  
  
GSE53653 Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [RNA-seq] RNA-Seq XB-ART-49634
  
  
  
GSE56169 E2a is necessary for Smad2/3 dependent transcription and the direct repression of lefty RNA-Seq ChIP-Seq XB-ART-50519
  
  
  
Select All 
Xtr   
Xla 
 
GSE56242 High-resolution analysis of gene activity during the Xenopus mid-blastula transition RNA-Seq XB-ART-48872
Select All 
Xtr   
Xla 
 
GSE56586 Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs RNA-Seq XB-ART-49279
GSE58420 Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes RNA-Seq XB-ART-51224
GSE59309 Multicilin drives centriole biogenesis via E2f proteins RNA-Seq ChIP-Seq XB-ART-49750
  
  
Select All 
Xtr   
Xla 
 
GSE63228 Xenopus Piwi protein associated transcripts indicate regulation beyond transposons RNA-Seq ncRNA-Seq RIP-Seq CLIP-Seq XB-ART-52877
Select All 
Xtr   
Xla 
 
GSE64551 Occupancy and transcriptional profile of Prdm12 in posteriorized neural tissue RNA-Seq ChIP-Seq XB-ART-51355
  
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE65785 Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development RNA-Seq XB-ART-51804
Select All 
Xtr   
Xla 
 
GSE67974 Embryonic transcription is controlled by maternally defined chromatin state RNA-Seq ChIP-Seq Bisulfite-Seq XB-ART-51677
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE68972 The identification of differentially expressed genes between animal and vegetal blastomeres in Xenopus laevis RNA-Seq XB-ART-50741
GSE69701 RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM® genes for hereditary disorders of hearing and balance RNA-Seq XB-ART-51592
GSE71006 Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution RNA-Seq XB-ART-51076
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE72657 Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment RNA-Seq ChIP-Seq XB-ART-52077
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE73419 Tissue gene expression of Xenopus laevis J strain [tissue] RNA-Seq XB-ART-52612
Select All 
Xtr   
Xla 
 
GSE73430 Developmental gene expression of Xenopus laevis J strain [stage] RNA-Seq XB-ART-52612
Select All 
Xtr   
Xla 
 
GSE73870 On the relationship of protein and mRNA dynamics in vertebrate embryonic development [polyA] RNA-Seq XB-ART-51556
Select All 
Xtr   
Xla 
 
GSE73904 On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero] RNA-Seq XB-ART-51556
Select All 
Xtr   
Xla 
 
GSE74470 Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis RNA-Seq XB-ART-53166
GSE74919 Whole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline. RNA-Seq WTTS-Seq XB-ART-52200
Select All 
Xtr   
Xla 
 
GSE75164 Sperm is epigenetically programmed to regulate gene transcription in embryo RNA-Seq ChIP-Seq MBD-Seq MNase-Seq XB-ART-53997
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE75278 Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula RNA-Seq XB-ART-51980
  
  
GSE76059 ChIP-sequencing in stage 10.5 Xenopus laevis embryos ChIP-Seq XB-ART-52612
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE76342 RNAseq profiling of multiciliated cells RNA-Seq XB-ART-53709
  
  
  
  
  
  
  
  
  
  
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE76915 A novel role for ASCL1 in the regulation of mesendoderm formation via HDAC-dependent antagonism of VegT function RNA-Seq XB-ART-51664
  
GSE76991 Differential expression analysis of Gcn5 knockdown embryos at early developmental stage 10.5 in Xenopus laevis RNA-Seq XB-ART-51942
  
GSE76994 Differential expression analysis of triple knockdown of TBP and TBP-related factors (TKD) in Xenopus laevis embryos at early developmental stage 10.5 RNA-Seq XB-ART-51942
  
GSE77281 RNA-seq based identification of potential RARgamma target genes in Xenopus laevis RNA-Seq
  
  
GSE77363 Genome-wide binding pattern of β-catenin during Xenopus gastrulation ChIP-Seq XB-ART-52028
  
GSE77724 Translational profiling of retinal ganglion cell optic nerve regeneration in Xenopus laevis RNA-Seq XB-ART-52302
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE78176 Histone modification and transcription factor ChIPseq of Xenopus laevis epithelial progenitors ChIP-Seq XB-ART-53709
  
  
  
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE81458 Regional expression of X. tropicalis transcription factors in early gastrula embryos RNA-Seq XB-ART-52307
  
  
  
  
  
Select All 
Xtr   
Xla 
 
GSE83784 Identification of microRNAs and microRNA targets in Xenopus ectoderm RNA-Seq RIP-Seq miRNA-Seq XB-ART-52452
  
  
Select All 
Xtr   
Xla 
 

???pagination.result.page??? 1 2 ???pagination.result.next???