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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
irx3	xenopus		neural tube [+] chordoneural hinge,posterior wall of neurenteric canal,posterior neural tube,anterior neural tube,ventrolateral neural tube,dorsolateral neural tube,sulcus limitans of neural tube,neurenteric canal,Mauthner cell,accessory olfactory bulb,adenohypophysis,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,brain ventricle,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central canal,central nucleus of the thalamus,cerebellum,diencephalon,dorsal column nucleus,dorsal funiculus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,floor plate,forebrain,forebrain-midbrain boundary,fourth ventricle,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,hindbrain,hypophysis,hypothalamus,infundibulum,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,medulla oblongata,melanotrope,mesencephalic artery,mesencephalic vein,metencephalic artery,metencephalic vein,midbrain,midbrain tegmentum,midbrain-hindbrain boundary,mitral cell,mitral cell layer of the olfactory bulb,neural stem cell,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,nucleus of the solitary tract,nucleus reticularis inferior,nucleus reticularis medialis,nucleus reticularis superior,oculomotor motornucleus,olfactory bulb,oligodendrocyte,optic chiasm,optic stalk,optic tectum,optic tract,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,pia mater,pial cell,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,radial glial cell,raphe nucleus,retromammillary area,rhombic lip,rhombomere,roof plate,rostral tuberal region,solitary tract,spinal neuron,stria terminalis,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral funiculus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventricular zone,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,brain,forebrain,hindbrain,midbrain,optic tectum,spinal cord

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Expression summary for irx3

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 33 and 34	brain, hindbrain, midbrain, spinal cord	in situ hybridization
Papalopulu Lab Assay Papalopulu Lab	tropicalis	1 image	NF stage 28	brain, hindbrain, midbrain, midbrain-hindbrain boundary, posterior neural tube	in situ hybridization
AxelDB CNRS UMR 8080	laevis	1 image	NF stage 29 and 30	brain	in situ hybridization
Alarcón P et al. (2009) Assay Paper	laevis	2 images	NF stage 19 to NF stage 37 and 38	hindbrain, midbrain, neural tube, spinal cord	in situ hybridization
Rodríguez-Seguel E et al. (2009) Assay Paper	laevis	4 images	NF stage 14 to NF stage 26	diencephalon, hindbrain, midbrain, spinal cord	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	5 images	NF stage 22 to NF stage 28	anterior neural tube, brain, hindbrain, midbrain, neural tube, [+] posterior neural tube, spinal cord	in situ hybridization
Papalopulu TNeu131p22 Assay Papalopulu Lab	tropicalis	1 image	NF stage 28	brain, hindbrain, midbrain, spinal cord	in situ hybridization
Xiro3 encodes a Xenopus homolog of the Drosophila Iroquois genes and functions in neural specification. Paper	laevis	1 image	NF stage 33 and 34	anterior neural tube, brain, hindbrain, midbrain, midbrain-hindbrain boundary, [+] ventricular zone	in situ hybridization
A hindbrain-repressive Wnt3a/Meis3/Tsh1 circuit promotes neuronal differentiation and coordinates tissue maturation. Paper	laevis	2 images	NF stage 16 to NF stage 18	hindbrain, midbrain, spinal cord	in situ hybridization
HNF1B controls proximal-intermediate nephron segment identity in vertebrates by regulating Notch signalling components and I... Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	hindbrain, spinal cord	in situ hybridization
Towards a molecular anatomy of the Xenopus pronephric kidney. Paper	laevis	1 image	NF stage 35 and 36	brain	in situ hybridization
The prepattern transcription factor Irx3 directs nephron segment identity. Paper	laevis	1 image	NF stage 35 and 36	brain, hindbrain, midbrain, midbrain-hindbrain boundary, spinal cord	in situ hybridization
Juraver-Geslin HA et al. (2014) Assay Paper	laevis	4 images	NF stage 29 and 30 to NF stage 37 and 38	diencephalon, dorsal thalamus, forebrain, prosomere, thalamus, [+] zona limitans intrathalamica	in situ hybridization
Zhang S et al. (2014) Assay Paper	laevis	1 image	NF stage 20 to NF stage 35 and 36	brain, hindbrain, midbrain, posterior neural tube	in situ hybridization
Prdm12 specifies V1 interneurons through cross-repressive interactions with Dbx1 and Nkx6 genes in Xenopus. Paper	laevis	1 image	NF stage 28	hindbrain	in situ hybridization

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