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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
foxa2	xenopus		neural tube [+] chordoneural hinge,posterior wall of neurenteric canal,posterior neural tube,anterior neural tube,ventrolateral neural tube,dorsolateral neural tube,sulcus limitans of neural tube,neurenteric canal,Mauthner cell,accessory olfactory bulb,adenohypophysis,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,brain ventricle,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central canal,central nucleus of the thalamus,cerebellum,diencephalon,dorsal column nucleus,dorsal funiculus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,floor plate,forebrain,forebrain-midbrain boundary,fourth ventricle,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,hindbrain,hypophysis,hypothalamus,infundibulum,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,medulla oblongata,melanotrope,mesencephalic artery,mesencephalic vein,metencephalic artery,metencephalic vein,midbrain,midbrain tegmentum,midbrain-hindbrain boundary,mitral cell,mitral cell layer of the olfactory bulb,neural stem cell,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,nucleus of the solitary tract,nucleus reticularis inferior,nucleus reticularis medialis,nucleus reticularis superior,oculomotor motornucleus,olfactory bulb,oligodendrocyte,optic chiasm,optic stalk,optic tectum,optic tract,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,pia mater,pial cell,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,radial glial cell,raphe nucleus,retromammillary area,rhombic lip,rhombomere,roof plate,rostral tuberal region,solitary tract,spinal neuron,stria terminalis,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral funiculus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventricular zone,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,brain,forebrain,hindbrain,midbrain,optic tectum,spinal cord

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Expression summary for foxa2

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Experiment	Species	Images	Stages	Anatomy	Assay
Zorn Lab Assay Zorn Lab	laevis	1 image	NF stage 19	floor plate, neural tube	in situ hybridization
Zorn AM and Mason J (2001) Assay Paper	laevis	1 image	NF stage 29 and 30 to NF stage 35 and 36	brain, floor plate	in situ hybridization
Fujimi TJ and Aruga J (2008) Assay Paper	laevis	1 image	NF stage 33 and 34	brain, floor plate, spinal cord	in situ hybridization
Paper	laevis	1 image	NF stage 28	floor plate, spinal cord	in situ hybridization
Repression of Wnt/beta-catenin signaling in the anterior endoderm is essential for liver and pancreas development. Paper	laevis	1 image	NF stage 18	floor plate, neural tube	in situ hybridization
A fork head related multigene family is transcribed in Xenopus laevis embryos. Paper	laevis	1 image	NF stage 23 to NF stage 28	brain, floor plate, forebrain, hindbrain, midbrain, [+] neural tube, spinal cord	in situ hybridization
Suzuki M et al. (2010) Assay Paper	laevis	2 images	NF stage 15 to NF stage 16	floor plate, neural tube	in situ hybridization
Li Y et al. (2008) Assay Paper	laevis	1 image	NF stage 20	floor plate, neural tube, posterior neural tube	in situ hybridization
Pearl EJ et al. (2011) Assay Paper	tropicalis	1 image	NF stage 25	brain	in situ hybridization
Stabilization of speckle-type POZ protein (Spop) by Daz interacting protein 1 (Dzip1) is essential for Gli turnover and the ... Paper	laevis	1 image	NF stage 35 and 36	floor plate, spinal cord	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 32	spinal cord	in situ hybridization
The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with t... Paper	laevis	1 image	NF stage 17	neural tube	in situ hybridization
The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with t... Paper	laevis	1 image	NF stage 25	floor plate, neural tube, spinal cord	in situ hybridization
The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with t... Paper	laevis	1 image	NF stage 27	floor plate, neural tube, spinal cord	in situ hybridization
E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation. Paper	laevis	1 image	NF stage 29 and 30	brain, spinal cord	in situ hybridization
Koide T et al. (2006) Assay Paper	laevis	2 images	NF stage 22 to NF stage 44	floor plate, forebrain, neural tube	in situ hybridization
Peyrot SM et al. (2011) Assay Paper	laevis	3 images	NF stage 22 to NF stage 44	brain, floor plate	in situ hybridization
A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification. Paper	laevis	1 image	NF stage 35 and 36	neural tube	in situ hybridization
Pohl BS and Knöchel W (2005) Assay Paper	laevis	1 image	NF stage 8 to NF stage 35 and 36	floor plate, midbrain, spinal cord	in situ hybridization
Gli proteins encode context-dependent positive and negative functions: implications for development and disease.	laevis	1 image	NF stage 33 and 34	floor plate	immunohistochemistry
Sequential expression of HNF-3 beta and HNF-3 alpha by embryonic organizing centers: the dorsal lip/node, notochord and floo... Paper	laevis	1 image	NF stage 24 to NF stage 35 and 36	floor plate, hindbrain, midbrain, spinal cord	in situ hybridization
Floor plate and motor neuron induction by vhh-1, a vertebrate homolog of hedgehog expressed by the notochord. Paper	laevis	1 image	NF stage 32 to NF stage 35 and 36	floor plate	immunohistochemistry

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