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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
foxa1	xenopus		neural tube [+] chordoneural hinge,posterior wall of neurenteric canal,posterior neural tube,anterior neural tube,ventrolateral neural tube,dorsolateral neural tube,sulcus limitans of neural tube,neurenteric canal,Mauthner cell,accessory olfactory bulb,adenohypophysis,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,brain ventricle,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central canal,central nucleus of the thalamus,cerebellum,diencephalon,dorsal column nucleus,dorsal funiculus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,floor plate,forebrain,forebrain-midbrain boundary,fourth ventricle,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,hindbrain,hypophysis,hypothalamus,infundibulum,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,medulla oblongata,melanotrope,mesencephalic artery,mesencephalic vein,metencephalic artery,metencephalic vein,midbrain,midbrain tegmentum,midbrain-hindbrain boundary,mitral cell,mitral cell layer of the olfactory bulb,neural stem cell,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,nucleus of the solitary tract,nucleus reticularis inferior,nucleus reticularis medialis,nucleus reticularis superior,oculomotor motornucleus,olfactory bulb,oligodendrocyte,optic chiasm,optic stalk,optic tectum,optic tract,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,pia mater,pial cell,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,radial glial cell,raphe nucleus,retromammillary area,rhombic lip,rhombomere,roof plate,rostral tuberal region,solitary tract,spinal neuron,stria terminalis,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral funiculus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventricular zone,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,brain,forebrain,hindbrain,midbrain,optic tectum,spinal cord

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Expression summary for foxa1

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Experiment	Species	Images	Stages	Anatomy	Assay
D'Souza A et al. (2003) Assay Paper	tropicalis	1 image	NF stage 26 to NF stage 27	chordoneural hinge, floor plate	in situ hybridization
D'Souza A et al. (2003) Assay Paper	tropicalis	1 image	NF stage 26 to NF stage 40	anterior neural tube, chordoneural hinge, floor plate, neural tube, posterior neural tube, [+] spinal cord	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	3 images	NF stage 26 to NF stage 32	chordoneural hinge, floor plate, hindbrain, midbrain, spinal cord	in situ hybridization
Zorn Xl.52787_foxa1 Assay Zorn Lab	laevis	2 images	NF stage 33 and 34 to NF stage 35 and 36	chordoneural hinge, floor plate, forebrain, hindbrain	in situ hybridization
Xenbase User Curated Experiment	laevis	1 image	NF stage 28	chordoneural hinge	in situ hybridization
A fork head related multigene family is transcribed in Xenopus laevis embryos. Paper	laevis	1 image	NF stage 35 and 36	brain, floor plate, hindbrain, midbrain, spinal cord	in situ hybridization
XFKH2, a Xenopus HNF-3 alpha homologue, exhibits both activin-inducible and autonomous phases of expression in early embryos. Paper	laevis	1 image	NF stage 11 to NF stage 33 and 34	floor plate	in situ hybridization
Peyrot SM et al. (2011) Assay Paper	laevis	1 image	NF stage 14	floor plate, neural tube	in situ hybridization
Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways. Paper	laevis	1 image	NF stage 32	chordoneural hinge	in situ hybridization
Pohl BS and Knöchel W (2005) Assay Paper	laevis	1 image	NF stage 8 to NF stage 35 and 36	brain	in situ hybridization

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