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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
cdx4	xenopus		neural tube [+] chordoneural hinge,posterior wall of neurenteric canal,posterior neural tube,anterior neural tube,ventrolateral neural tube,dorsolateral neural tube,sulcus limitans of neural tube,neurenteric canal,Mauthner cell,accessory olfactory bulb,adenohypophysis,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,brain ventricle,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central canal,central nucleus of the thalamus,cerebellum,diencephalon,dorsal column nucleus,dorsal funiculus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,floor plate,forebrain,forebrain-midbrain boundary,fourth ventricle,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,hindbrain,hypophysis,hypothalamus,infundibulum,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,medulla oblongata,melanotrope,mesencephalic artery,mesencephalic vein,metencephalic artery,metencephalic vein,midbrain,midbrain tegmentum,midbrain-hindbrain boundary,mitral cell,mitral cell layer of the olfactory bulb,neural stem cell,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,nucleus of the solitary tract,nucleus reticularis inferior,nucleus reticularis medialis,nucleus reticularis superior,oculomotor motornucleus,olfactory bulb,oligodendrocyte,optic chiasm,optic stalk,optic tectum,optic tract,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,pia mater,pial cell,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,radial glial cell,raphe nucleus,retromammillary area,rhombic lip,rhombomere,roof plate,rostral tuberal region,solitary tract,spinal neuron,stria terminalis,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral funiculus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventricular zone,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,brain,forebrain,hindbrain,midbrain,optic tectum,spinal cord

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Expression summary for cdx4

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Experiment	Species	Images	Stages	Anatomy	Assay
XDB3 XDB3	laevis	1 image	NF stage 20	posterior neural tube	in situ hybridization
Harland lab in situ screen Assay Harland lab in situ screen	tropicalis	1 image	NF stage 29 and 30	brain, posterior neural tube	in situ hybridization
Shiotsugu J et al. (2004) Assay Paper	laevis	3 images	NF stage 16 to NF stage 26	neural tube, posterior neural tube	in situ hybridization
Reece-Hoyes JS et al. (2002) Assay Paper	tropicalis	1 image	NF stage 20 to NF stage 33 and 34	posterior neural tube, posterior wall of neurenteric canal	in situ hybridization
Retinoid signalling is required for information transfer from mesoderm to neuroectoderm during gastrulation. Paper	laevis	1 image	NF stage 20	neural tube	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 17	neural tube	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 20	posterior neural tube	in situ hybridization
Chen JA et al. (2005) Assay Paper	tropicalis	1 image	NF stage 29 and 30	roof plate, spinal cord	in situ hybridization
Analysis of the developing Xenopus tail bud reveals separate phases of gene expression during determination and outgrowth. Paper	laevis	1 image	NF stage 29 and 30	posterior neural tube, posterior wall of neurenteric canal, roof plate, spinal cord	in situ hybridization
Beck CW and Slack JM (1998) Assay Paper	laevis	3 images	NF stage 29 and 30	neural tube, posterior neural tube, posterior wall of neurenteric canal, roof plate, spinal cord	in situ hybridization
Conserved roles for Oct4 homologues in maintaining multipotency during early vertebrate development. Paper	laevis	1 image	NF stage 28	posterior neural tube	in situ hybridization
Polycomb and bmi-1 homologs are expressed in overlapping patterns in Xenopus embryos and are able to interact with each other. Paper	laevis	1 image	NF stage 28	brain, forebrain, hindbrain, midbrain, spinal cord	in situ hybridization
Dingwell KS and Smith JC (2006) Assay Paper	laevis	1 image	NF stage 20 to NF stage 28	neural tube, posterior neural tube	in situ hybridization
Northrop JL and Kimelman D (1994) Assay Paper	laevis	1 image	NF stage 22	posterior neural tube	in situ hybridization
A consensus Oct1 binding site is required for the activity of the Xenopus Cdx4 promoter. Paper	laevis	1 image	NF stage 18 to NF stage 29 and 30	posterior neural tube	in situ hybridization
Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos. Paper	laevis	1 image	NF stage 18	posterior neural tube	in situ hybridization

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