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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
lmo4.2	xenopus		involuted dorsal mesoderm [+] Eberth-Kastschenko layer,abdominal myoblast,anterior notochord,archenteron roof midline,axial ossicle,caudal presomitic mesoderm,cranial skeleton,dermatome,dermomyotome,dorsal endoderm,dorsomedial edge of myotome,flexural organ,left-right organizer,left-right organizer primordium,mandibular mesenchyme,monociliated cell,myocoelic slit,myotome,notochordal sheath,perichordal tissue,postcranial axial skeleton,posterior notochord,prechordal plate,presomitic mesoderm,rib,rostral presomitic mesoderm,sclerotomal cartilage,sclerotomal mesenchyme,sclerotome,stratum compactum,stratum spongiosum,syndetome,transverse process,urostyle,vacuolated notochordal tissue,ventrolateral edge of myotome,vertebra,vertebral centrum,vertebral column,vertebral element,axial mesoderm,axial skeleton,cervical vertebra,dermatome,dermis,elastica externa,flexural organ,gastrocoel roof plate,head somite 1,head somite 2,head somite 3,head somite 4,myotome of head somite 1,myotome of head somite 2,myotome of head somite 3,myotome of head somite 4,myotome of tail somite 14,myotome of tail somite 15,myotome of tail somite 16,myotome of tail somite 17,myotome of tail somite 18,myotome of trunk somite 1,myotome of trunk somite 10,myotome of trunk somite 11,myotome of trunk somite 12,myotome of trunk somite 13,myotome of trunk somite 2,myotome of trunk somite 3,myotome of trunk somite 4,myotome of trunk somite 5,myotome of trunk somite 6,myotome of trunk somite 7,myotome of trunk somite 8,myotome of trunk somite 9,notochord,notochordal epithelium,paraxial mesoderm,presomitic mesoderm,presumptive axial mesoderm,presumptive paraxial mesoderm,sacral vertebra,sclerotome of head somite 4,sclerotome of tail somite 14,sclerotome of tail somite 15,sclerotome of tail somite 16,sclerotome of tail somite 17,sclerotome of tail somite 18,sclerotome of trunk somite 1,sclerotome of trunk somite 10,sclerotome of trunk somite 11,sclerotome of trunk somite 12,sclerotome of trunk somite 13,sclerotome of trunk somite 2,sclerotome of trunk somite 3,sclerotome of trunk somite 4,sclerotome of trunk somite 5,sclerotome of trunk somite 6,sclerotome of trunk somite 7,sclerotome of trunk somite 8,sclerotome of trunk somite 9,somite,tail somite 14,tail somite 15,tail somite 16,tail somite 17,tail somite 18,trunk somite 1,trunk somite 10,trunk somite 11,trunk somite 12,trunk somite 13,trunk somite 2,trunk somite 3,trunk somite 4,trunk somite 5,trunk somite 6,trunk somite 7,trunk somite 8,trunk somite 9,urostyle

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Experiment details for lmo4.2

Genomic analysis of Xenopus organizer function.

Genomic analysis of Xenopus organizer function.

Gene	Clone	Species	Stages	Anatomy
lmo4.2.L		laevis	NF stage 12.5	involuted dorsal mesoderm

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Figure 7. Relaxed statistical criteria select for additional genes with organizer-related expression patterns. The cluster results for the second set of RP criteria, which required correlated expression in the Nog+Dkk and Dor conditions, identifies additional unknown genes with organizer-related expression patterns. The hierarchical tree is on the far left, followed by the clustergram, and then the summary of the RP results at 10% FDR. Colors and columns are same as described in the Figure 3A. Black ticks between the cluster tree and the clustergram mark every tenth gene, allowing referencing to 3 for the gene identities. Genes in this list that lacked described gastrula stage expression patterns were analyzed by whole mount in situ hybridization. The top of the cluster contains genes that were repressed in the Nog+Dkk and Dor conditions; unknown genes within this group are excluded from organizer tissues (magenta box). The bottom of the cluster contains genes that were activated in the Nog+Dkk and Dor conditions; unknown genes within this group are enriched in organizer tissues (orange box). Each tested gene is labeled with its name and the Affymetrix probe set number. Genes marked "no pattern" showed no staining, or a non-specific staining pattern that was similar to sense controls. Genes marked "no gastrula pattern," showed no pattern during gastrula stages, but did show specific patterns at later stages that are not shown here. Each photo is labeled with the developmental stage of the embryo in the bottom left corner, and the orientation in the bottom right corner. veg: vegetal view, dorsal faces up. dor: dorsal view, anterior faces up. gene name was assigned by protein sequence similarity using Homologene.