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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
tnfaip1	xenopus		optic field [+] Muller cell,amacrine cell,bipolar neuron,central retina,choroid,choroid fissure,ciliary body,ciliary marginal zone,conjunctiva,cornea,eye photoreceptor cell,globe,horizontal cell,inner limiting membrane,iris,lens,lens epithelium,lens fiber cell mass,lens placode,lens transitional zone,lower eyelid,optic disc,optic fiber layer,optic nerve,outer limiting membrane,peripheral retina,photoreceptor layer,pigment layer,pupil,retina,retinal ganglion cell,retinal ganglion cell layer,retinal inner nuclear layer,retinal inner plexiform layer,retinal layer,retinal neural layer,retinal outer nuclear layer,retinal outer plexiform layer,retinal pigmented epithelium,retinal progenitor cell,retinal progenitor cell region,retinal stem cell,retinal stem cell region,sclera,choroid fissure,eye,eye primordium,iris,optic nerve,optic stalk,optic vesicle

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Experiment details for tnfaip1

Grant PA et al. (2014) Assay

Novel animal pole-enriched maternal mRNAs are preferentially expressed in neural ectoderm.

Gene	Clone	Species	Stages	Anatomy
tnfaip1.L		laevis	NF stage 12 to NF stage 13	optic field
tnfaip1.L		laevis	NF stage 23 to NF stage 25	optic vesicle
tnfaip1.L		laevis	NF stage 32	eye

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Fig. 7. Expression patterns of animal-enriched genes from neural plate to late tail bud stages. A: Expression patterns of the seven highest ANenriched genes that were characterized. B: Expression patterns of the remaining seven AN-enriched genes that were characterized. Early (left) and late (third from right) neural plate stages are anterior views with dorsal to the top. Early (second from right) and late (far right) tail bud stages are side views with anterior to the right and dorsal to the top. ba, branchial arch; br, brain; cg, cement gland; epi, epidermis; h, heart; le, lens; li, liver; nc, neural crest; ne, nephric mesoderm; np, neural plate; olf, olfactory, oto, otocyst; ov, optic vesicle; pm, paraxial mesoderm; ppe, preplacodal ectoderm; ret; retina; sc, spinal cord; so, somites; vg, ventral gut.

Gene	Clone	Species	Stages	Anatomy
tnfaip1.L		laevis	NF stage 32	eye

tnfaip1 (tumor necrosis factor, alpha-induced protein 1) gene expression in Xenopus laevis embryo, assayed via in situ hybridization, NF stage 32, lateral view, anterior right, dorsal up.

Gene	Clone	Species	Stages	Anatomy
tnfaip1.L		laevis	NF stage 35 and 36 to NF stage 37 and 38	retina , lens , eye

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Fig. 8. Expression patterns of animal-enriched genes at late larval stages. A: Expression patterns of the five highest AN-enriched genes that were characterized. B: Expression patterns of the five next highest AN-enriched genes that were characterized. C: Expression patterns of the remaining four AN-enriched genes that were characterized. Left: Side views of embryos with anterior to the right and dorsal to the top. Right: Transverse vibratome sections of whole mount ISH preparations showing internal histology. ba, branchial arch; br, brain; cg, cement gland; epi, epidermis; h, heart; le, lens; li, liver; nc, neural crest; ne, nephric mesoderm; np, neural plate; olf, olfactory, oto, otocyst; ov, optic vesicle; pm, paraxial mesoderm; ppe, pre-placodal ectoderm; ret; retina; sc, spinal cord; so, somites; vg, ventral gut.