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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
shh	xenopus		marginal zone [+] blastopore lip,upper blastopore lip,lower blastopore lip,blastopore,involuted dorsal mesoderm,involuted ventral mesoderm,circumblastoporal collar,cloacal sphincter,proctodeum

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Expression summary for shh

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Experiment	Species	Images	Stages	Anatomy	Assay
López SL et al. (2003) Assay Paper	laevis	1 image	NF stage 10.25 to NF stage 13	blastopore, blastopore lip, marginal zone, upper blastopore lip	in situ hybridization
The presumptive floor plate (notoplate) induces behaviors associated with convergent extension in medial but not lateral neur... Paper	laevis	1 image	NF stage 11 to NF stage 13	blastopore lip	in situ hybridization
Negative regulation of Hedgehog signaling by the cholesterogenic enzyme 7-dehydrocholesterol reductase. Paper	xenopus	1 image	NF stage 10 to NF stage 12.5	dorsal marginal zone, upper blastopore lip	in situ hybridization
Xenbase User Curated Experiment European Xenopus Resource Centre (EXRC)	tropicalis	1 image	NF stage 11	blastopore lip, dorsal marginal zone, upper blastopore lip	in situ hybridization
Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional scre... Paper	tropicalis	1 image	NF stage 13	dorsal marginal zone, involuted dorsal mesoderm, upper blastopore lip	in situ hybridization
Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis. Paper	laevis	1 image	NF stage 10	marginal zone	in situ hybridization
Patient Lab	laevis	6 images	NF stage 10.5 to NF stage 40	dorsal marginal zone, proctodeum	in situ hybridization
Peyrot SM et al. (2011) Assay Paper	laevis	2 images	NF stage 10.5 to NF stage 11	dorsal marginal zone, involuting marginal zone, upper blastopore lip	in situ hybridization
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. Paper	tropicalis	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
TAK1 promotes BMP4/Smad1 signaling via inhibition of erk MAPK: a new link in the FGF/BMP regulatory network. Paper	laevis	1 image	NF stage 10 to NF stage 10.25	dorsal marginal zone, involuting marginal zone, marginal zone, upper blastopore lip	in situ hybridization
Pitcairn E et al. (2017) Assay Paper	laevis	1 image	NF stage 10.5	upper blastopore lip	in situ hybridization

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