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Summary Expression Phenotypes Gene Literature (0) GO Terms (3) Nucleotides (110) Proteins (45) Interactants (23) Wiki
XB-GENEPAGE-877263

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for thumpd3 - All

RefSeq mRNAs(2)
Models - Gene (24)
Models - mRNA (34)
mRNAs (6)
ESTs (29)

RefSeq mRNAs (2)

Accession Version name Length Protein Species
NM_001199489 THUMP domain-containing protein 3 2144 bp NP_001186418 X. tropicalis
XM_041590813 XP_041446747.1 THUMP domain-containing protein 3 isoform X2 2418 bp XP_041446747 X. laevis.L

Models - Gene (24)

Source Version Model Species
NCBI 10.0 XBXT10g005358 X. tropicalis
NCBI 10.1 XBXL10_1g19928 X. laevis.L
ENSEMBL 10.0 thumpd3 X. tropicalis
JGI 9.1 Xelaev18023932m.g X. laevis.L
Xenbase 9.1 gene5532 X. tropicalis
Xenbase 9.2 gene15932 X. laevis.L
ENSEMBL 9.1 thumpd3 X. tropicalis
JGI 7.1 Xetro.D02366 X. tropicalis
JGI 6.0 XeXenL6RMv10038726m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000001447 X. tropicalis
JGI 4.1 gw1.196.23.1 X. tropicalis
JGI 4.1 e_gw1.196.22.1 X. tropicalis
JGI 4.1 e_gw1.196.23.1 X. tropicalis
JGI 4.1 e_gw1.196.62.1 X. tropicalis
JGI 4.1 gw1.196.62.1 X. tropicalis
JGI 4.1 gw1.196.22.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1960015 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1960022 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1960023 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1960062 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1960023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1960001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_196000023 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_196000001 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.0 mRNA026647 X. tropicalis
NCBI 10.1 XBmRNA36871 X. laevis.L
ENSEMBL 10.0 ENSXETT00000104556 X. tropicalis
ENSEMBL 10.0 ENSXETT00000096318 X. tropicalis
JGI 9.1 Xelaev18023932m X. laevis.L
Xenbase 9.1 rna17941 X. tropicalis
Xenbase 9.2 rna46569 X. laevis.L
ENSEMBL 9.1 ENSXETT00000067262 X. tropicalis
ENSEMBL 9.1 ENSXETT00000092644 X. tropicalis
ENSEMBL 9.1 ENSXETT00000083059 X. tropicalis
ENSEMBL 9.1 ENSXETT00000097797 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104556 X. tropicalis
ENSEMBL 9.1 ENSXETT00000003051 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068980 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082860 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096318 X. tropicalis
JGI 7.1 Xetro.D02366.2 X. tropicalis
JGI 7.1 Xetro.D02366.1 X. tropicalis
JGI 6.0 XeXenL6RMv10038726m X. laevis.L
JGI 4.1 gw1.196.23.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000003051 X. tropicalis
JGI 4.1 e_gw1.196.22.1 X. tropicalis
JGI 4.1 e_gw1.196.23.1 X. tropicalis
JGI 4.1 e_gw1.196.62.1 X. tropicalis
JGI 4.1 gw1.196.62.1 X. tropicalis
JGI 4.1 gw1.196.22.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1960015 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1960022 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1960023 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1960062 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1960023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1960001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_196000023 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_196000001 X. tropicalis

mRNAs from cDNA libraries (6)

Clone Accession Species Library Anatomy Stage
IMAGE:6977541 BC076941 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7556094 BC160426 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
NM_001199489 X. tropicalis
XM_012960798 X. tropicalis
XM_018259035 X. laevis.L
XM_041590813 X. laevis.L

ESTs (29)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8858112 EL821799 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8856962 EL820065 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8930865 EL665129 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7614735 CX390819 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7556094 CX503645 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7558134 CX497038 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA045a10 CR586349 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA030k23 CR569489 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
xthr02C21 CN119627 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr26K08 CN104722 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas040p22 AL651404 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu086o11 AL805585 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6977541 CF224474 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:8856962 EL820066 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8909420 EL804569 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8930865 EL665128 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7614735 CX390818 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7556094 CX503644 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7558134 CX497037 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA045a10 CR586350 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA030k23 CR569490 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
xthr26K08 CN104721 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas090g04 BX763692 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas074g02 BX750363 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu086o11 BX693534 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xl252d19 DC109423 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL038e11 BJ039712 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3472765 BI446630 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
PBX0132G11 AW643783 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage