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Summary Expression Phenotypes Gene Literature (361) GO Terms (5) Nucleotides (229) Proteins (110) Interactants (1668) Wiki
XB-GENEPAGE-484087

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for pax6 - All

RefSeq mRNAs(18)
Models - Gene (28)
Models - mRNA (44)
mRNAs (36)
ESTs (56)

RefSeq mRNAs (18)

Accession Version Protein Name Length Protein Species
NM_001006762 NM_001006762.1 paired box protein Pax-6 2361 bp NP_001006763 X. tropicalis
XM_031900005 XM_031900005.1 XP_031755865.1 paired box protein Pax-6 isoform X1 3060 bp XP_031755865 X. tropicalis
XM_031900006 XM_031900006.1 XP_031755866.1 paired box protein Pax-6 isoform X2 3003 bp XP_031755866 X. tropicalis
XM_031900007 XM_031900007.1 XP_031755867.1 paired box protein Pax-6 isoform X3 2896 bp XP_031755867 X. tropicalis
XM_031900008 XM_031900008.1 XP_031755868.1 paired box protein Pax-6 isoform X4 2841 bp XP_031755868 X. tropicalis
XM_018256405 XM_018256405.2 paired box 6 L homeolog isoform X1 2807 bp XP_018111894 X. laevis.L
XM_018256406 XM_018256406.2 paired box 6 L homeolog isoform X1 2702 bp XP_018111895 X. laevis.L
XM_018256407 XM_018256407.2 paired box 6 L homeolog isoform X1 2641 bp XP_018111896 X. laevis.L
XM_018256409 XM_018256409.2 paired box 6 L homeolog isoform X4 2656 bp XP_018111898 X. laevis.L
XM_018256410 XM_018256410.2 paired box 6 L homeolog isoform X5 2611 bp XP_018111899 X. laevis.L
XM_018259312 XM_018259312.2 paired box protein Pax-6 isoform X1 3075 bp XP_018114801 X. laevis.S
XM_018259314 XM_018259314.2 paired box protein Pax-6 isoform X2 3018 bp XP_018114803 X. laevis.S
XM_018259316 XM_018259316.2 paired box protein Pax-6 isoform X3 2929 bp XP_018114805 X. laevis.S
XM_018259317 XM_018259317.2 paired box protein Pax-6 isoform X4 2870 bp XP_018114806 X. laevis.S
NM_001172195 NM_001172195.2 paired box protein Pax-6 1979 bp NP_001165666 X. laevis.S
NM_001085944 NM_001085944.1 paired box 6 L homeolog 2264 bp NP_001079413 X. laevis.L
XM_041589125 XM_041589125.1 XP_041445059.1 paired box 6 L homeolog isoform X2 2762 bp XP_041445059 X. laevis.L
XM_041589126 XM_041589126.1 XP_041445060.1 paired box 6 L homeolog isoform X3 2393 bp XP_041445060 X. laevis.L

Models - Gene (28)

Source Version Model Species
NCBI 10.0 XBXT10g001595 X. tropicalis
NCBI 10.1 XBXL10_1g17877 X. laevis.L
NCBI 10.1 XBXL10_1g20830 X. laevis.S
ENSEMBL 10.0 pax6 X. tropicalis
JGI 9.1 Xelaev18021973m.g X. laevis.L
JGI 9.1 Xelaev18024402m.g X. laevis.S
Xenbase 9.1 gene33815 X. tropicalis
Xenbase 9.2 gene14696 X. laevis.L
Xenbase 9.2 gene2181 X. laevis.S
ENSEMBL 9.1 pax6 X. tropicalis
JGI 7.1 Xetro.D00384 X. tropicalis
JGI 7.2 Xelaev16071059m.g X. laevis.L
JGI 7.2 Xelaev16059527m.g X. laevis.S
JGI 6.0 XeXenL6RMv10022925m.g X. laevis.L
JGI 6.0 XeXenL6RMv10049081m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000008175 X. tropicalis
JGI 4.1 e_gw1.399.60.1 X. tropicalis
JGI 4.1 e_gw1.399.61.1 X. tropicalis
JGI 4.1 e_gw1.399.62.1 X. tropicalis
JGI 4.1 gw1.399.60.1 X. tropicalis
JGI 4.1 gw1.399.61.1 X. tropicalis
JGI 4.1 gw1.399.62.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_399000003 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_399000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_399000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_399000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_399000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_399000002 X. tropicalis

mRNAs based on gene models(44)

Source Version Model Species
NCBI 10.0 mRNA007971 X. tropicalis
NCBI 10.1 XBmRNA33023 X. laevis.L
NCBI 10.1 XBmRNA38380 X. laevis.S
ENSEMBL 10.0 ENSXETT00000104359 X. tropicalis
ENSEMBL 10.0 ENSXETT00000088897 X. tropicalis
ENSEMBL 10.0 ENSXETT00000096459 X. tropicalis
ENSEMBL 10.0 ENSXETT00000017930 X. tropicalis
ENSEMBL 10.0 ENSXETT00000017931 X. tropicalis
ENSEMBL 10.0 ENSXETT00000090648 X. tropicalis
ENSEMBL 10.0 ENSXETT00000091449 X. tropicalis
JGI 9.1 Xelaev18021973m X. laevis.L
JGI 9.1 Xelaev18024402m X. laevis.S
Xenbase 9.1 rna63726 X. tropicalis
Xenbase 9.2 rna42826 X. laevis.L
Xenbase 9.2 rna6338 X. laevis.S
ENSEMBL 9.1 ENSXETT00000091449 X. tropicalis
ENSEMBL 9.1 ENSXETT00000090648 X. tropicalis
ENSEMBL 9.1 ENSXETT00000017931 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096459 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087881 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068819 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104359 X. tropicalis
ENSEMBL 9.1 ENSXETT00000088897 X. tropicalis
ENSEMBL 9.1 ENSXETT00000017930 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079915 X. tropicalis
JGI 7.1 Xetro.D00384.1 X. tropicalis
JGI 7.2 Xelaev16059527m X. laevis.S
JGI 7.2 Xelaev16071059m X. laevis.L
JGI 6.0 XeXenL6RMv10022925m X. laevis.L
JGI 6.0 XeXenL6RMv10049081m X. laevis.S
JGI 4.1 e_gw1.399.60.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000017931 X. tropicalis
ENSEMBL 4.1 ENSXETT00000017930 X. tropicalis
JGI 4.1 e_gw1.399.61.1 X. tropicalis
JGI 4.1 e_gw1.399.62.1 X. tropicalis
JGI 4.1 gw1.399.60.1 X. tropicalis
JGI 4.1 gw1.399.61.1 X. tropicalis
JGI 4.1 gw1.399.62.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_399000003 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_399000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_399000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_399000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_399000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_399000002 X. tropicalis

mRNAs from cDNA libraries (36)

Clone Accession Species Library Anatomy Stage
NM_001006762 X. tropicalis
pax6-HAR182 BC075551 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
pax6-HAR182 BC075551 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6992220 BC075551 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6992220 BC075551 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
XM_031900008 X. tropicalis
XM_031900007 X. tropicalis
XM_031900006 X. tropicalis
XM_031900005 X. tropicalis
D88738 X. laevis.S
D88737 X. laevis.S
IMAGE:4682745 BC041712 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
AF154558 X. laevis.L
AF154557 X. laevis.L
AF154556 X. laevis.L
AF154555 X. laevis.L
AF154554 X. laevis.S
AF154553 X. laevis.S
AF154552 X. laevis.L
U77532 X. laevis.S
U76386 X. laevis.S
U67887 X. laevis.L
U64513 X. laevis.S
NM_001085944 X. laevis.L
NM_001172195 X. laevis.S
XM_018259317 X. laevis.S
XM_018259316 X. laevis.S
XM_018259314 X. laevis.S
XM_018259312 X. laevis.S
XM_018256410 X. laevis.L
XM_018256409 X. laevis.L
XM_018256407 X. laevis.L
XM_018256406 X. laevis.L
XM_018256405 X. laevis.L
XM_041589126 X. laevis.L
XM_041589125 X. laevis.L

ESTs (56)

Clone Accession 5'/3' Species Library Anatomy Stage
pax6-HAR182 CF264195 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
st19a03 DC168270 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st20a03 DC168803 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st54k22 DC180136 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8884130 EL840104 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7623206 CX372556 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7787258 CX329595 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT12658 CX321147 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st114h05 DC193107 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
THdA030b06 CR580740 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7588806 CX310470 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7607695 CX368399 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu019p17 AL637652 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu023h04 AL639231 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu012c05 AL639518 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu118o10 AL798556 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu100d15 AL803143 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xthr43F09 CN115912 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTbA062p17 CR423237 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA022f07 CR438572 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8884130 EL840105 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
XZT12658 CX321146 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst19a03 DC138182 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst20a03 DC138611 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst52c20 DC149234 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst54k22 DC149852 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst114h05 DC164377 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA022f07 CR438573 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA042p03 CR444735 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA013o08 CR565908 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7588806 CX310469 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7787258 CX329594 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7623206 CX372555 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7607695 DR894516 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr43F09 CN115911 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTbA062p17 CR423238 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7980037 DR723236 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7978880 DR723570 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
p15d4 AU245263 5' X. laevis.L Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
xl288p04 DC120033 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl264e12 DC113034 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl245h07 DC107401 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl246h07 DC107705 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGp998P1010564 BX843560 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL474n24ex BP694555 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL490n23ex BP700815 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL503b13ex BP701857 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:4084634 BG893173 5' X. laevis.L Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
IMAGE:4682745 BQ735259 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL031a23 BJ034845 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL503b13ex BP734804 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL031a23 BJ051198 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL438n22ex BP718200 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL474n24ex BP728722 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL490n23ex BP733507 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:4084634 BI446864 3' X. laevis.L Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21