Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (10) GO Terms (3) Nucleotides (167) Proteins (52) Interactants (365) Wiki
XB-GENEPAGE-480726

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for sox4 - All

Models - Gene (35)
Models - mRNA (35)
mRNAs (11)
ESTs (66)

Models - Gene (35)

Source Version Model Species
NCBI 10.0 XBXT10g004153 X. tropicalis
NCBI 10.1 XBXL10_1g27678 X. laevis.L
NCBI 10.1 XBXL10_1g29375 X. laevis.S
ENSEMBL 10.0 sox4 X. tropicalis
JGI 9.1 Xelaev18031718m.g X. laevis.L
JGI 9.1 Xelaev18033503m.g X. laevis.S
Xenbase 9.1 gene5950 X. tropicalis
Xenbase 9.2 gene8653 X. laevis.L
Xenbase 9.2 gene14673 X. laevis.S
ENSEMBL 9.1 sox4 X. tropicalis
JGI 7.1 Xetro.F00732 X. tropicalis
JGI 7.2 Xelaev16025795m.g X. laevis.L
JGI 7.2 Xelaev16009870m.g X. laevis.S
JGI 6.0 XeXenL6RMv10012004m.g X. laevis.L
JGI 6.0 XeXenL6RMv10055354m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000014408 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3260003 X. tropicalis
JGI 4.1 e_gw1.326.35.1 X. tropicalis
JGI 4.1 e_gw1.326.36.1 X. tropicalis
JGI 4.1 e_gw1.326.37.1 X. tropicalis
JGI 4.1 gw1.326.35.1 X. tropicalis
JGI 4.1 gw1.326.36.1 X. tropicalis
JGI 4.1 gw1.326.37.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3260008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3260035 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3260036 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3260037 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3260017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3260018 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_3260005 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_326000001 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_326000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_326000017 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_326000018 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_326000005 X. tropicalis

Models - mRNA (35)

Source Version Model Species
NCBI 10.0 mRNA020791 X. tropicalis
NCBI 10.1 XBmRNA51948 X. laevis.L
NCBI 10.1 XBmRNA55203 X. laevis.S
ENSEMBL 10.0 ENSXETT00000081500 X. tropicalis
JGI 9.1 Xelaev18031718m X. laevis.L
JGI 9.1 Xelaev18033503m X. laevis.S
Xenbase 9.1 rna19217 X. tropicalis
Xenbase 9.2 rna25192 X. laevis.L
Xenbase 9.2 rna42765 X. laevis.S
ENSEMBL 9.1 ENSXETT00000081500 X. tropicalis
JGI 7.1 Xetro.F00732.1 X. tropicalis
JGI 7.2 Xelaev16009870m X. laevis.S
JGI 7.2 Xelaev16025795m X. laevis.L
JGI 6.0 XeXenL6RMv10012004m X. laevis.L
JGI 6.0 XeXenL6RMv10055354m X. laevis.S
JGI 4.1 estExt_fgenesh1_kg.C_3260003 X. tropicalis
ENSEMBL 4.1 ENSXETT00000031506 X. tropicalis
JGI 4.1 e_gw1.326.35.1 X. tropicalis
JGI 4.1 e_gw1.326.36.1 X. tropicalis
JGI 4.1 e_gw1.326.37.1 X. tropicalis
JGI 4.1 gw1.326.35.1 X. tropicalis
JGI 4.1 gw1.326.36.1 X. tropicalis
JGI 4.1 gw1.326.37.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3260008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3260035 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3260036 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3260037 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3260017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3260018 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_3260005 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_326000001 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_326000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_326000017 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_326000018 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_326000005 X. tropicalis

mRNAs (11)

Clone Accession Species Library Anatomy Stage
NM_001045619 X. tropicalis
IMAGE:7683214 BC123924 X. tropicalis
TEgg121n06 CR926278 X. tropicalis
IMAGE:7602172 BC135263 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
AB194694 X. laevis.S
IMAGE:5571702 BC073494 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4683577 BC059296 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001086529 X. laevis.L
NM_001096710 X. laevis.S
IMAGE:9093552 BC170171 X. laevis.S
IMAGE:9093554 BC170173 X. laevis.S

ESTs (66)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:9019983 EL869257 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8885524 EL842443 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8929120 EL678061 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8924632 EL670478 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8960818 EL661997 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
st9n12 DC175815 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7789546 CX322789 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602172 CX365557 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7605686 DR893965 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7694644 CX922964 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7657582 CX829499 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA053b07 CR588127 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA029h08 CR579458 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA005c19 CR576293 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA023b16 CR574487 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA023b15 CR574347 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA039l17 CR574075 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA027d22 CR572246 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA027e04 CR570951 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA007f19 CR560122 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA033m22 CR429095 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xthr20H02 CN103163 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr20H01 CN102993 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTpA027a11 BX743591 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu116c05 AL794081 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064f14 AL783243 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu059b17 AL679506 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:9019983 EL869258 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8885524 EL842444 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8929120 EL678060 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8924632 EL670477 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
rst9n12 DC145515 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7694644 CX922963 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7659516 CX839199 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7657582 CX829498 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7605686 DR893964 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602172 CX365556 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7789546 CX322788 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA053b07 CR588128 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA047p02 CR581132 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA029h08 CR579459 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA005c19 CR576294 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA023b16 CR574488 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA023b15 CR574348 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA039l17 CR574076 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA027d22 CR572247 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA027e04 CR570952 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA007f19 CR560123 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA033m22 CR429096 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xthr20H02 CN103162 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr20H01 CN102992 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTpA027a11 BX743592 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA022a05 BX731299 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu116c05 BX695043 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064f14 BX687137 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu059b17 BX684210 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGp998C2310922 BX854722 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998G1212243 BX850166 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:6935781 CB941829 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:4681239 BQ885926 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5543075 BQ735973 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4683577 BQ733168 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5162207 BQ397855 5' X. laevis.S Soares NXEG egg unfertilized egg stage
IMAGE:4957006 BI447799 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:6875759 CB562967 3' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:5162207 BQ397854 3' X. laevis.S Soares NXEG egg unfertilized egg stage