Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (4) Nucleotides (229) Proteins (51) Interactants (21) Wiki
XB-GENEPAGE-999462

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for htatsf1 - All

RefSeq mRNAs(2)
Models - Gene (35)
Models - mRNA (37)
mRNAs (10)
ESTs (101)

RefSeq mRNAs (2)

Accession Version name Length Protein Species
NM_001291692 NM_001291692.1 17S U2 SnRNP complex component HTATSF1 2273 bp NP_001278621 X. tropicalis
NM_001089621 NM_001089621.1 HIV Tat-specific factor 1 1978 bp NP_001083090 X. laevis.S

Models - Gene (35)

Source Version Model Species
NCBI 10.0 XBXT10g009263 X. tropicalis
NCBI 10.1 XBXL10_1g38172 X. laevis.S
Xenbase 9.2 gene5386 X. laevis.L
ENSEMBL 10.0 htatsf1 X. tropicalis
JGI 9.1 Xelaev18042332m.g X. laevis.S
JGI 9.1 Xelaev18039022m.g X. laevis.L
Xenbase 9.1 gene15923 X. tropicalis
Xenbase 9.2 gene5088 X. laevis.S
JGI 8.0 Xetrov14033792m.g X. tropicalis
JGI 7.1 Xetro.H00892 X. tropicalis
JGI 7.2 Xelaev16008271m.g X. laevis.S
JGI 6.0 XeXenL6RMv10005484m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000019749 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_310053 X. tropicalis
JGI 4.1 e_gw1.31.271.1 X. tropicalis
JGI 4.1 e_gw1.31.273.1 X. tropicalis
JGI 4.1 e_gw1.31.56.1 X. tropicalis
JGI 4.1 gw1.31.271.1 X. tropicalis
JGI 4.1 gw1.31.273.1 X. tropicalis
JGI 4.1 gw1.31.56.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_310029 X. tropicalis
JGI 4.1 estExt_Genewise1.C_310056 X. tropicalis
JGI 4.1 estExt_Genewise1.C_310271 X. tropicalis
JGI 4.1 estExt_Genewise1.C_310273 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_310011 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_310012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_310054 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_310055 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_310015 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_31000011 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_31000012 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000054 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000055 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000056 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_31000016 X. tropicalis

mRNAs based on gene models(37)

Source Version Model Species
NCBI 10.0 mRNA045801 X. tropicalis
NCBI 10.1 XBmRNA72113 X. laevis.S
ENSEMBL 10.0 ENSXETT00000108106 X. tropicalis
ENSEMBL 10.0 ENSXETT00000115689 X. tropicalis
JGI 9.1 Xelaev18039022m X. laevis.L
JGI 9.1 Xelaev18042332m X. laevis.S
Xenbase 9.1 rna35235 X. tropicalis
Xenbase 9.2 rna15785 X. laevis.L
Xenbase 9.2 rna14858 X. laevis.S
JGI 8.0 Xetrov14033792m X. tropicalis
JGI 7.1 Xetro.H00892.1 X. tropicalis
JGI 7.1 Xetro.H00892.2 X. tropicalis
JGI 7.2 Xelaev16008271m X. laevis.S
JGI 6.0 XeXenL6RMv10005484m X. laevis.S
JGI 4.1 estExt_fgenesh1_pg.C_310053 X. tropicalis
ENSEMBL 4.1 ENSXETT00000042760 X. tropicalis
JGI 4.1 e_gw1.31.271.1 X. tropicalis
JGI 4.1 e_gw1.31.273.1 X. tropicalis
JGI 4.1 e_gw1.31.56.1 X. tropicalis
JGI 4.1 gw1.31.271.1 X. tropicalis
JGI 4.1 gw1.31.273.1 X. tropicalis
JGI 4.1 gw1.31.56.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_310029 X. tropicalis
JGI 4.1 estExt_Genewise1.C_310056 X. tropicalis
JGI 4.1 estExt_Genewise1.C_310271 X. tropicalis
JGI 4.1 estExt_Genewise1.C_310273 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_310011 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_310012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_310054 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_310055 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_310015 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_31000011 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_31000012 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000054 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000055 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000056 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_31000016 X. tropicalis

mRNAs from cDNA libraries (10)

Clone Accession Species Library Anatomy Stage
TTbA072e20 CU025150 X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas015k14 CT027971 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7017128 BC090381 X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:7720202 BC160527 X. tropicalis NIH_XGC_tropInt1 intestine frog
NM_001291692 X. tropicalis
DN076661 X. tropicalis
DN076660 X. tropicalis
IMAGE:4058186 BC084628 X. laevis.S
IMAGE:5048879 BC059346 X. laevis.S
NM_001089621 X. laevis.S

ESTs (101)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:9016006 EL862864 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9010607 EL854630 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8891361 EL851533 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8932592 EL668236 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
xtbs15N15 CN078912 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7788108 CX333262 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7635286 CX339143 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619446 CX347047 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7593230 CX327483 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7547817 CX489588 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7611196 CX378251 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7533087 CX434108 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7561426 CX464818 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567781 CX508901 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7550985 CX510076 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7805779 DR841918 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7804644 DR839978 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7799865 DN061370 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7749236 DN046559 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7746535 DN041549 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7744132 DN037711 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7720202 CX983959 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7516601 CX747399 5' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:7515495 CX745651 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7513220 CX742402 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7512807 CX741248 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7564201 CX474399 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7526324 CX443906 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA057n05 CR446392 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA057n06 CR445304 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA072e20 CR432069 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas015k14 AL631828 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas009i05 AL630119 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu118n20 AL794056 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu071m06 AL780621 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu016e20 AL642941 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7017128 CF524983 5' X. tropicalis NICHD_XGC_Swb1 whole organism frog
TGas138b17 AL964726 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:9016006 EL862865 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9010607 EL854631 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8891361 EL851534 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8932592 EL668235 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
xtbs15N15 CN078911 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7564201 CX474398 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7635286 DR902085 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619446 DR898007 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611196 DR895795 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7805779 DR841917 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7804644 DR839977 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7516601 CX747398 3' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:7799865 DN061369 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7749236 DN046558 3' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7744132 DN037710 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7720202 CX983958 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7513220 CX742401 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7512807 CX741247 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7550985 CX510075 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567781 CX508900 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7547817 CX489587 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7561426 CX464817 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7533087 CX434107 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7788108 CX333261 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7593230 CX327482 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA057n05 CR446393 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA057n06 CR445305 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA072e20 CR432070 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TNeu118n20 BX700604 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu071m06 BX686499 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xl340h11 DC135041 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl265k24 DC113460 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk142h02ex DC049278 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk134b18ex DC046574 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8535148 EB483444 5' X. laevis.S NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
XL451j03ex BP686545 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL463k12ex BP691141 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL447o15ex BP685051 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL430n08ex BP679091 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL414b04ex BP673541 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998E138637 BX852827 5' X. laevis.S Wellcome CRC pRN3 St19 26 whole organism NF stage 19 to NF stage 26
XL150m08 BJ095574 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL054f19 BJ069715 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4203750 BG553459 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:3548532 BF613730 5' X. laevis.S Wellcome CRC pRN3 St19 26 whole organism NF stage 19 to NF stage 26
IMAGE:3379862 BE506723 5' X. laevis.S Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
XENOPUS_SOURCE_ID:xlnga003k02 AW200616 5' X. laevis.S normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5
XENOPUS_SOURCE_ID:xlnga003j11 AW200591 5' X. laevis.S normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5
rxl221o04 DC082287 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl340h11 DC098926 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxlk134b18ex DC013379 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk142h02ex DC015999 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL451j03ex BP722293 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL447o15ex BP720950 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL430n08ex BP716000 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL215b11 BJ642883 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL150m08 BJ099470 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL054f19 BJ086815 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4203750 BG579254 3' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:3548532 BF615685 3' X. laevis.S Wellcome CRC pRN3 St19 26 whole organism NF stage 19 to NF stage 26
IMAGE:3379862 BE192005 3' X. laevis.S Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9