Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (11) Nucleotides (195) Proteins (80) Interactants (198) Wiki
XB-GENEPAGE-998270

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for katnb1 - Xenopus tropicalis

RefSeq mRNAs(4)
Models - Gene (25)
Models - mRNA (35)
mRNAs (6)
ESTs (32)

RefSeq mRNAs (4)

Accession Version name Length Protein Species
NM_213709 NM_213709.3 katanin p80 WD40 repeat-containing subunit B1 3034 bp NP_998874 X. tropicalis
XM_012960790 XM_012960790.3 katanin p80 WD40 repeat-containing subunit B1 isoform X1 3134 bp XP_012816244 X. tropicalis
XM_012960791 XM_012960791.3 katanin p80 WD40 repeat-containing subunit B1 isoform X1 3131 bp XP_012816245 X. tropicalis
XM_012960792 XM_012960792.3 katanin p80 WD40 repeat-containing subunit B1 isoform X1 3036 bp XP_012816246 X. tropicalis

Models - Gene (25)

Source Version Model Species
NCBI 10.0 XBXT10g006755 X. tropicalis
ENSEMBL 10.0 katnb1 X. tropicalis
Xenbase 9.1 gene4144 X. tropicalis
ENSEMBL 9.1 katnb1 X. tropicalis
JGI 8.0 Xetrov14017565m.g X. tropicalis
JGI 7.1 Xetro.D02102 X. tropicalis
ENSEMBL 4.1 ENSXETG00000025041 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_60085 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_60056 X. tropicalis
JGI 4.1 e_gw1.6.292.1 X. tropicalis
JGI 4.1 e_gw1.6.293.1 X. tropicalis
JGI 4.1 e_gw1.6.9.1 X. tropicalis
JGI 4.1 gw1.6.292.1 X. tropicalis
JGI 4.1 gw1.6.293.1 X. tropicalis
JGI 4.1 gw1.6.9.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_60009 X. tropicalis
JGI 4.1 estExt_Genewise1.C_60292 X. tropicalis
JGI 4.1 estExt_Genewise1.C_60293 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_60021 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_60084 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_60024 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_6000008 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_6000021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_6000085 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_6000086 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.0 mRNA033441 X. tropicalis
ENSEMBL 10.0 ENSXETT00000097466 X. tropicalis
ENSEMBL 10.0 ENSXETT00000053740 X. tropicalis
ENSEMBL 10.0 ENSXETT00000078667 X. tropicalis
Xenbase 9.1 rna13546 X. tropicalis
ENSEMBL 9.1 ENSXETT00000053740 X. tropicalis
ENSEMBL 9.1 ENSXETT00000078667 X. tropicalis
ENSEMBL 9.1 ENSXETT00000097466 X. tropicalis
ENSEMBL 9.1 ENSXETT00000069218 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085585 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094968 X. tropicalis
JGI 8.0 Xetrov14017565m X. tropicalis
JGI 7.1 Xetro.D02102.2 X. tropicalis
JGI 7.1 Xetro.D02102.1 X. tropicalis
JGI 7.1 Xetro.D02102.3 X. tropicalis
JGI 7.1 Xetro.D02102.4 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_60085 X. tropicalis
ENSEMBL 4.1 ENSXETT00000053740 X. tropicalis
JGI 4.1 e_gw1.6.292.1 X. tropicalis
JGI 4.1 e_gw1.6.293.1 X. tropicalis
JGI 4.1 e_gw1.6.9.1 X. tropicalis
JGI 4.1 gw1.6.292.1 X. tropicalis
JGI 4.1 gw1.6.293.1 X. tropicalis
JGI 4.1 gw1.6.9.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_60056 X. tropicalis
JGI 4.1 estExt_Genewise1.C_60009 X. tropicalis
JGI 4.1 estExt_Genewise1.C_60292 X. tropicalis
JGI 4.1 estExt_Genewise1.C_60293 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_60021 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_60084 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_60024 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_6000008 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_6000021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_6000085 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_6000086 X. tropicalis

mRNAs from cDNA libraries (6)

Clone Accession Species Library Anatomy Stage
NM_213709 X. tropicalis
TEgg076g13 CR926306 X. tropicalis
IMAGE:5309113 BC067983 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
XM_012960792 X. tropicalis
XM_012960791 X. tropicalis
XM_012960790 X. tropicalis

ESTs (32)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:9018670 EL867214 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8891297 EL851745 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8857654 EL821352 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7618972 CX346308 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7544061 CX460004 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7532001 CX421654 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564664 CX475267 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7692673 CX919025 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TGas104l09 AL971418 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas107e15 AL965576 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA047o09 BX730729 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA047o03 BX730727 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas024g05 AL627470 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas051f18 AL679862 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu030g21 AL650774 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu026m14 AL641217 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5309113 BQ392028 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:9018670 EL867215 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8891297 EL851746 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8857654 EL821353 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7564664 CX475266 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7692673 CX919024 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7802311 DR835743 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7544061 CX460003 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7532001 CX421653 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7618972 CX346307 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas104l09 BX754776 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas107e15 BX753820 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas051f18 BX749006 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA047o09 BX730730 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA047o03 BX730728 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:5309113 BQ392027 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13