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Summary Expression Phenotypes Gene Literature (1) GO Terms (10) Nucleotides (302) Proteins (66) Interactants (23) Wiki
XB-GENEPAGE-994633

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for prpf39.1 - Xenopus laevis

RefSeq mRNAs(6)
Models - Gene (9)
Models - mRNA (9)
mRNAs (8)
ESTs (54)

RefSeq mRNAs (6)

Accession Version name Length Protein Species
NM_001096111 NM_001096111.1 pre-mRNA-processing factor 39 2757 bp NP_001089580 X. laevis.L
XM_041572147 XM_041572147.1 XP_041428081.1 pre-mRNA-processing factor 39 isoform X1 2735 bp XP_041428081 X. laevis.L
XM_041572148 XM_041572148.1 XP_041428082.1 pre-mRNA-processing factor 39 isoform X2 2749 bp XP_041428082 X. laevis.L
XM_041572149 XM_041572149.1 XP_041428083.1 pre-mRNA-processing factor 39 isoform X2 2575 bp XP_041428083 X. laevis.L
XM_018232375 XM_018232375.2 pre-mRNA-processing factor 39-like 2764 bp XP_018087864 X. laevis.S
XM_018232376 XM_018232376.2 pre-mRNA-processing factor 39-like 2627 bp XP_018087865 X. laevis.S

Models - Gene (9)

Source Version Model Species
NCBI 10.1 XBXL10_1g35839 X. laevis.L
NCBI 10.1 XBXL10_1g37317 X. laevis.S
JGI 9.1 Xelaev18039608m.g X. laevis.L
JGI 9.1 Xelaev18041253m.g X. laevis.S
Xenbase 9.2 gene40509 X. laevis.L
Xenbase 9.2 gene5820 X. laevis.S
JGI 7.2 Xelaev16036003m.g X. laevis.L
JGI 6.0 XeXenL6RMv10026224m.g X. laevis.L
JGI 6.0 XeXenL6RMv10035931m.g X. laevis.L

mRNAs based on gene models(9)

Source Version Model Species
NCBI 10.1 XBmRNA67720 X. laevis.L
NCBI 10.1 XBmRNA70443 X. laevis.S
JGI 9.1 Xelaev18039608m X. laevis.L
JGI 9.1 Xelaev18041253m X. laevis.S
Xenbase 9.2 rna82533 X. laevis.L
Xenbase 9.2 rna17034 X. laevis.S
JGI 7.2 Xelaev16036003m X. laevis.L
JGI 6.0 XeXenL6RMv10026224m X. laevis.L
JGI 6.0 XeXenL6RMv10035931m X. laevis.L

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
IMAGE:5079121 BC098999 X. laevis.L
IMAGE:3398688 BC079828 X. laevis.S NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
NM_001096111 X. laevis.L
XM_018232376 X. laevis.S
XM_018232375 X. laevis.S
XM_041572149 X. laevis.L
XM_041572148 X. laevis.L
XM_041572147 X. laevis.L

ESTs (54)

Clone Accession 5'/3' Species Library Anatomy Stage
xl292p24 DC121141 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl246j20 DC107749 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk124j19ex DC043500 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk156m04ex DC063059 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk2k17ex DC053497 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL434m17ex BP680427 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL508o18ex BP703582 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL483f20ex BP697991 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998E198378 BX854195 5' X. laevis.L Wellcome CRC pcDNAI egg egg unfertilized egg stage
IMAGp998D067822 BX846412 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
XL209m08 BJ624851 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL203o20 BJ623253 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL106a15 BJ068199 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL062c17 BJ059300 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL079h08 BJ064404 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL073h12 BJ061591 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL011m07 BJ029221 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL008g07 BJ041408 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL022k08 BJ033722 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL009g07 BJ041017 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL007f11 BJ031471 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL010h12 BJ028833 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL010g07 BJ028814 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL013f19 BJ029740 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:5514240 CF290709 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:6935980 CD811470 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:6935980 CB984027 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:3438111 BF613655 5' X. laevis.L Wellcome CRC pRN3 dorsal lip upper blastopore lip NF stage 10 to NF stage 12.5
IMAGE:3398688 BE575381 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
AW871779 AW871779 5' X. laevis.L Xenopus laevis tadpole stage 24 whole organism NF stage 24
IMAGE:3199829 AW767341 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
rxl292p24 DC086353 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxlk2k17ex DC020129 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk156m04ex DC029560 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk124j19ex DC010386 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL434m17ex BP717076 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL483f20ex BP731145 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL209m08 BJ641355 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL203o20 BJ639911 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL106a15 BJ085482 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL079h08 BJ082233 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL073h12 BJ079772 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL062c17 BJ077812 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL008g07 BJ055998 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL009g07 BJ055382 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL011m07 BJ043959 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL010h12 BJ043603 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL010g07 BJ043587 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL022k08 BJ048972 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL007f11 BJ046425 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL013f19 BJ044452 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3475180 BI347935 3' X. laevis.L Wellcome CRC pcDNAI St10 5 whole organism NF stage 10.5
IMAGE:3438111 BF232145 3' X. laevis.L Wellcome CRC pRN3 dorsal lip upper blastopore lip NF stage 10 to NF stage 12.5
IMAGE:3199829 AW766645 3' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23