Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (1) GO Terms (7) Nucleotides (342) Proteins (52) Interactants (42) Wiki
XB-GENEPAGE-993327

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for rtf1 - All

RefSeq mRNAs(5)
Models - Gene (31)
Models - mRNA (37)
mRNAs (9)
ESTs (223)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001005068 NM_001005068.1 RNA polymerase-associated protein RTF1 homolog 2396 bp NP_001005068 X. tropicalis
XM_012968253 XM_012968253.3 RNA polymerase-associated protein RTF1 homolog isoform X1 3573 bp XP_012823707 X. tropicalis
XM_018231260 XM_018231260.2 RNA polymerase-associated protein RTF1 homolog 3491 bp XP_018086749 X. laevis.L
XM_041574366 XM_041574366.1 XP_041430300.1 RNA polymerase-associated protein RTF1 homolog isoform X1 3480 bp XP_041430300 X. laevis.S
XM_041574367 XM_041574367.1 XP_041430301.1 RNA polymerase-associated protein RTF1 homolog isoform X2 3420 bp XP_041430301 X. laevis.S

Models - Gene (31)

Source Version Model Species
NCBI 10.1 XBXL10_1g36233 X. laevis.L
NCBI 10.0 XBXT10g010645 X. tropicalis
NCBI 10.1 XBXL10_1g38487 X. laevis.S
ENSEMBL 10.0 rtf1 X. tropicalis
Xenbase 9.2 gene45732 X. laevis.L
JGI 9.1 Xelaev18040088m.g X. laevis.L
Xenbase 9.1 gene1 X. tropicalis
ENSEMBL 9.1 rtf1 X. tropicalis
JGI 8.0 Xetrov14035575m.g X. tropicalis
JGI 7.2 Xelaev16028163m.g X. laevis.L
JGI 7.1 Xetro.H01870 X. tropicalis
JGI 6.0 XeXenL6RMv10043603m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000017903 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5010027 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_5010009 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_501000008 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_501000026 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_501000027 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_501000009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5010026 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_5010008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5010060 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5010030 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5010003 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_5010018 X. tropicalis
JGI 4.1 gw1.501.60.1 X. tropicalis
JGI 4.1 gw1.501.30.1 X. tropicalis
JGI 4.1 gw1.501.3.1 X. tropicalis
JGI 4.1 e_gw1.501.30.1 X. tropicalis
JGI 4.1 e_gw1.501.3.1 X. tropicalis
JGI 4.1 e_gw1.501.60.1 X. tropicalis

mRNAs based on gene models(37)

Source Version Model Species
NCBI 10.1 XBmRNA72688 X. laevis.S
NCBI 10.1 XBmRNA68600 X. laevis.L
ENSEMBL 10.0 ENSXETT00000062624 X. tropicalis
ENSEMBL 10.0 ENSXETT00000090716 X. tropicalis
ENSEMBL 10.0 ENSXETT00000038858 X. tropicalis
NCBI 10.0 mRNA052630 X. tropicalis
Xenbase 9.2 rna90245 X. laevis.L
Xenbase 9.1 rna2 X. tropicalis
ENSEMBL 9.1 ENSXETT00000038858 X. tropicalis
ENSEMBL 9.1 ENSXETT00000062624 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068516 X. tropicalis
ENSEMBL 9.1 ENSXETT00000078485 X. tropicalis
ENSEMBL 9.1 ENSXETT00000090716 X. tropicalis
JGI 9.1 Xelaev18040088m X. laevis.L
JGI 8.0 Xetrov14035575m X. tropicalis
JGI 7.2 Xelaev16028163m X. laevis.L
JGI 7.1 Xetro.H01870.1 X. tropicalis
JGI 6.0 XeXenL6RMv10043603m X. laevis.L
JGI 4.1 gw1.501.60.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5010030 X. tropicalis
JGI 4.1 e_gw1.501.3.1 X. tropicalis
JGI 4.1 e_gw1.501.60.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000038858 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_5010008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5010026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5010027 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_5010009 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_5010018 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5010003 X. tropicalis
JGI 4.1 e_gw1.501.30.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5010060 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_501000008 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_501000026 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_501000027 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_501000009 X. tropicalis
JGI 4.1 gw1.501.30.1 X. tropicalis
JGI 4.1 gw1.501.3.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
NM_001005068 X. tropicalis
IMAGE:6992115 BC076973 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
XM_012968253 X. tropicalis
TEgg114l09 CR942501 X. tropicalis
XM_018231260 X. laevis.L
XM_041574367 X. laevis.S
IMAGE:3744502 BC133777 X. laevis.S Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:7296184 BC133788 X. laevis.L Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
XM_041574366 X. laevis.S

ESTs (223)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu096l02 AL786925 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu134k20 AL787798 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu135c19 AL795310 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu112n07 AL797630 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu110b18 AL801479 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102i06 AL805488 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:9019437 EL868073 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9016516 EL863871 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8884830 EL841136 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
st79m16 DC186453 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st80m16 DC186705 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7531005 CX420449 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7531602 CX421540 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
st81m16 DC186927 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:5383579 BQ395935 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7577551 CX423164 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6992115 CF241051 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7642576 CX797295 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
xtbs30B17 CN088713 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TTbA058f20 CR431153 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
st106k05 DC192896 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA041b04 CR440543 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA015e09 CR565049 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA014d05 CR565196 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA035f13 CR568133 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA037k21 CR574799 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7527753 CX444958 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xtbs28F03 CN087378 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TTpA038f06 BX715481 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA048c18 BX727156 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xthr05O12 CN120740 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7538310 CX450671 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7587499 CX313542 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7094227 CK662745 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7591983 CX325688 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7539610 CX452692 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7786464 CX328302 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr04N02 CN118012 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7787566 CX330012 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7568844 CX457192 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7621777 CX342165 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr42K24 CN115225 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7597643 CX386429 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7543334 CX458981 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7613209 CX388648 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613894 CX389822 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas004o03 AL595798 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7604057 CX395612 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609601 CX410659 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7543693 CX459457 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6983734 CF152728 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
xtbs13K09 CN077280 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TGas046d16 AL650253 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7540726 CX462432 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas046f14 AL650263 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7541045 CX462627 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas036j08 AL651744 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7560712 CX463535 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas076h09 AL774108 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7565061 CX475675 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas078m04 AL774486 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7565773 CX482264 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas124a20 AL955926 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7550301 CX485850 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7558056 CX497164 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas124o22 AL955994 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7555578 CX503066 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas121k08 AL957411 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7556176 CX503867 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas092h09 AL960507 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7557697 CX506071 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas109i19 AL962736 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas094m04 AL968353 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7559272 CX514061 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas129a11 AL972360 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
xthr04N02 CN120550 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr03J20 CN113725 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr33B03 CN109298 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr32H12 CN108918 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr32L03 CN108809 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr17N08 CN100555 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr16L19 CN099754 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr11C09 CN096147 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr11C01 CN096139 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr01A23 CN094586 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8919108 EL832886 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8853522 EL815182 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8955405 EL658123 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
IMAGE:7854175 DT395089 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7803408 DR838064 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7801251 DR834380 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7739946 DN029794 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7712360 CX969872 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
CAAO8867 CX956752 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAN10927 CX926338 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7689900 CX914457 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7674612 CX885158 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7671037 CX878304 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TNeu018h24 AL638505 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21