Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (1) Nucleotides (210) Proteins (85) Interactants (261) Wiki
XB-GENEPAGE-993137

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for r3hdm2 - Xenopus tropicalis

RefSeq mRNAs(6)
Models - Gene (21)
Models - mRNA (34)
mRNAs (8)
ESTs (23)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
NM_001130339 NM_001130339.1 R3H domain-containing protein 2 3630 bp NP_001123811 X. tropicalis
XM_031895735 XM_031895735.1 XP_031751595.1 R3H domain-containing protein 2 isoform X1 6094 bp XP_031751595 X. tropicalis
XM_031895736 XM_031895736.1 XP_031751596.1 R3H domain-containing protein 2 isoform X2 6259 bp XP_031751596 X. tropicalis
XM_031895737 XM_031895737.1 XP_031751597.1 R3H domain-containing protein 2 isoform X4 6206 bp XP_031751597 X. tropicalis
XM_012956546 XM_012956546.3 R3H domain-containing protein 2 isoform X3 6245 bp XP_012812000 X. tropicalis
XM_018091108 XM_018091108.2 R3H domain-containing protein 2 isoform X1 6300 bp XP_017946597 X. tropicalis

Models - Gene (21)

Source Version Model Species
NCBI 10.0 XBXT10g011949 X. tropicalis
ENSEMBL 10.0 r3hdm2 X. tropicalis
Xenbase 9.1 gene4693 X. tropicalis
ENSEMBL 9.1 r3hdm2 X. tropicalis
JGI 8.0 Xetrov14010238m.g X. tropicalis
JGI 7.1 Xetro.B01384 X. tropicalis
ENSEMBL 4.1 ENSXETG00000017153 X. tropicalis
JGI 4.1 e_gw1.485.23.1 X. tropicalis
JGI 4.1 e_gw1.485.22.1 X. tropicalis
JGI 4.1 e_gw1.485.6.1 X. tropicalis
JGI 4.1 gw1.485.22.1 X. tropicalis
JGI 4.1 gw1.485.23.1 X. tropicalis
JGI 4.1 gw1.485.6.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4850005 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4850006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4850022 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4850023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4850011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4850003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_485000011 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_485000003 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.0 mRNA059294 X. tropicalis
ENSEMBL 10.0 ENSXETT00000068385 X. tropicalis
ENSEMBL 10.0 ENSXETT00000037400 X. tropicalis
ENSEMBL 10.0 ENSXETT00000078054 X. tropicalis
ENSEMBL 10.0 ENSXETT00000063883 X. tropicalis
Xenbase 9.1 rna15300 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096592 X. tropicalis
ENSEMBL 9.1 ENSXETT00000037400 X. tropicalis
ENSEMBL 9.1 ENSXETT00000078054 X. tropicalis
ENSEMBL 9.1 ENSXETT00000063883 X. tropicalis
ENSEMBL 9.1 ENSXETT00000073064 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095808 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068385 X. tropicalis
JGI 8.0 Xetrov14010238m X. tropicalis
JGI 7.1 Xetro.B01384.2 X. tropicalis
JGI 7.1 Xetro.B01384.5 X. tropicalis
JGI 7.1 Xetro.B01384.3 X. tropicalis
JGI 7.1 Xetro.B01384.1 X. tropicalis
JGI 7.1 Xetro.B01384.4 X. tropicalis
JGI 4.1 e_gw1.485.23.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000037400 X. tropicalis
JGI 4.1 e_gw1.485.22.1 X. tropicalis
JGI 4.1 e_gw1.485.6.1 X. tropicalis
JGI 4.1 gw1.485.22.1 X. tropicalis
JGI 4.1 gw1.485.23.1 X. tropicalis
JGI 4.1 gw1.485.6.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4850005 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4850006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4850022 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4850023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4850011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4850003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_485000011 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_485000003 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
TNeu122i02 CR942707 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7688734 BC167616 X. tropicalis NIH_XGC_tropTe4 testis frog
NM_001130339 X. tropicalis
XM_018091108 X. tropicalis
XM_012956546 X. tropicalis
XM_031895737 X. tropicalis
XM_031895736 X. tropicalis
XM_031895735 X. tropicalis

ESTs (23)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8921592 EL836303 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
xtbs10E15 CN075342 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
st38c07 DC176183 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
CAAO12598 CX963649 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAN11356 CX927135 5' X. tropicalis NIH_XGC_tropTe4 testis frog
CAAN10893 CX926277 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7688734 CX912218 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7687543 CX909093 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7686552 CX908146 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7661607 CX842960 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7641168 CX795099 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
TNeu122i02 AL792304 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu099h02 AL787005 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8921592 EL836304 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
xtbs10E15 CN075341 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
CAAO12598 CX963648 3' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAN11356 CX927134 3' X. tropicalis NIH_XGC_tropTe4 testis frog
CAAN10893 CX926276 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7686552 CX908145 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7661607 CX842959 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7641168 CX795098 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
TNeu122i02 BX699735 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu099h02 BX692138 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21