Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (22) Nucleotides (202) Proteins (48) Interactants (126) Wiki
XB-GENEPAGE-991264

Show:     All X. tropicalis X. laevis

Nucleotide sequences for lsm3 - All

RefSeq mRNAs(3)
Models - Gene (30)
Models - mRNA (33)
mRNAs (7)
ESTs (110)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001172287 NM_001172287.1 U6 snRNA-associated Sm-like protein LSm3 677 bp NP_001165758 X. tropicalis
NM_001097939 NM_001097939.1 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog 742 bp NP_001091408 X. laevis.S
XM_018259063 XM_018259063.2 U6 snRNA-associated Sm-like protein LSm3 783 bp XP_018114552 X. laevis.L

Models - Gene (30)

Source Version Model Species
NCBI 10.1 XBXL10_1g22239 X. laevis.S
NCBI 10.1 XBXL10_1g19956 X. laevis.L
NCBI 10.0 XBXT10g017533 X. tropicalis
ENSEMBL 10.0 ENSXETG00000043797 X. tropicalis
Xenbase 9.2 gene16278 X. laevis.L
Xenbase 9.2 gene5302 X. laevis.S
JGI 9.1 Xelaev18023959m.g X. laevis.L
JGI 9.1 Xelaev18025877m.g X. laevis.S
Xenbase 9.1 gene3894 X. tropicalis
JGI 8.0 Xetrov14041953m.g X. tropicalis
JGI 7.2 Xelaev16070409m.g X. laevis.S
JGI 7.1 Xetro.D02500 X. tropicalis
JGI 6.0 XeXenL6RMv10027884m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000011534 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_353000025 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_353000026 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_353000009 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_353000007 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_353000002 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_3530009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3530026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3530025 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3530007 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3530019 X. tropicalis
JGI 4.1 gw1.353.83.1 X. tropicalis
JGI 4.1 gw1.353.19.1 X. tropicalis
JGI 4.1 gw1.353.118.1 X. tropicalis
JGI 4.1 e_gw1.353.83.1 X. tropicalis
JGI 4.1 e_gw1.353.118.1 X. tropicalis
JGI 4.1 e_gw1.353.19.1 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA36926 X. laevis.L
NCBI 10.1 XBmRNA41346 X. laevis.S
ENSEMBL 10.0 ENSXETT00000119640 X. tropicalis
ENSEMBL 10.0 ENSXETT00000025236 X. tropicalis
NCBI 10.0 mRNA086562 X. tropicalis
Xenbase 9.2 rna15524 X. laevis.S
Xenbase 9.2 rna47551 X. laevis.L
JGI 9.1 Xelaev18025877m X. laevis.S
Xenbase 9.1 rna12708 X. tropicalis
JGI 9.1 Xelaev18023959m X. laevis.L
JGI 8.0 Xetrov14041953m X. tropicalis
JGI 7.2 Xelaev16070409m X. laevis.S
JGI 7.1 Xetro.D02500.1 X. tropicalis
JGI 7.1 Xetro.D02500.2 X. tropicalis
JGI 7.1 Xetro.D02500.3 X. tropicalis
JGI 6.0 XeXenL6RMv10027884m X. laevis.S
JGI 4.1 gw1.353.83.1 X. tropicalis
JGI 4.1 gw1.353.118.1 X. tropicalis
JGI 4.1 e_gw1.353.19.1 X. tropicalis
JGI 4.1 e_gw1.353.83.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000025236 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3530007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3530025 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3530026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_3530009 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3530019 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_353000007 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_353000025 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_353000026 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_353000009 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_353000002 X. tropicalis
JGI 4.1 e_gw1.353.118.1 X. tropicalis
JGI 4.1 gw1.353.19.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:7634969 BC135704 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8863087 BC156007 X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
TNeu119c17 CT025370 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001172287 X. tropicalis
IMAGE:6928825 BC133264 X. laevis.S
NM_001097939 X. laevis.S
XM_018259063 X. laevis.L

ESTs (110)

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu093d04 AL804214 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102n12 AL803295 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu123i22 AL802215 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu141o24 AL796637 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu111m11 AL793596 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu119c17 AL791166 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu091j20 AL781376 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7607018 CX367820 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8863087 EL704620 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7736329 DN022541 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
st31d03 DC172307 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st32d03 DC172578 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6986531 CF221651 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
xtbs08M17 CN093444 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7637664 CX407957 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7634969 CX338655 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7631681 CX397215 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7549582 CX484855 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7632854 CX374059 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7587945 CX314248 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA038n13 BX736533 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA068k11 BX735899 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA061h24 BX731089 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA005c08 BX709274 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
THdA036h16 CR582277 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA025h01 CR577692 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA056g14 CR440240 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA065j04 CR432367 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8863087 EL704619 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
rst31d03 DC142016 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst32d03 DC142300 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7511423 CX740334 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
IMAGE:7784146 CX740898 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
IMAGE:7549582 CX484854 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7557384 CX505898 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu078d19 BX687827 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu111m11 BX695668 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu123i22 BX702382 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA065j04 CR432368 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA056g14 CR440241 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA036h16 CR582278 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7587945 CX314247 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7631681 CX397214 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7637664 CX407956 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7632854 DR901502 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7634969 DR902049 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xtbs08M17 CN093443 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7736329 DN022540 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:6326307 CA973894 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
XL453d09ex BP687096 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL450e18ex BP686096 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL433l23ex BP680066 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL411m13ex BP672768 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL410m13ex BP672480 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk107f01ex DC037971 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGp998O218246 BX854082 5' X. laevis.S Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
IMAGE:3380588 BE507360 5' X. laevis.S Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
XL011j13 BJ029180 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3201031 AW767543 5' X. laevis.S Harland stage 19-23 whole organism NF stage 19 to NF stage 23
AW765250 AW765250 5' X. laevis.S Xenopus laevis tadpole stage 24 whole organism NF stage 24
xl334o09 DC133495 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3301249 BE132191 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
xl298l14 DC122648 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl280o17 DC117824 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl279h14 DC117392 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl278h15 DC117118 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL455d20ex BP687754 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL470c08ex BP693295 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL475m21ex BP694867 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL477a24ex BP695287 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL484n20ex BP698471 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL502n12ex BP701784 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL508g16ex BP703444 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL518o10ex BP706819 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL494m13ex BP708500 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL495e17ex BP708608 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk113a22ex DC039779 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk141d05ex DC048882 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk64g12ex DC055629 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk76p03ex DC059972 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk81g08ex DC061713 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk166e04ex DC066097 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL453e10ex BP687116 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL455d20ex BP723134 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL470c08ex BP727498 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL477a24ex BP729253 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL484n20ex BP731532 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL518o10ex BP739173 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL494m13ex BP740431 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL495e17ex BP740578 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxlk107f01ex DC005051 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk141d05ex DC015613 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk64g12ex DC022212 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk76p03ex DC026515 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk81g08ex DC028196 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk166e04ex DC032540 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL433l23ex BP716812 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3301249 BE491194 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL450e18ex BP721927 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL011j13 BJ043916 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
rxl293f12 DC086448 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3201031 AW767729 3' X. laevis.S Harland stage 19-23 whole organism NF stage 19 to NF stage 23
AW764922 AW764922 3' X. laevis.S Xenopus laevis tadpole stage 24 whole organism NF stage 24
rxl280o17 DC083096 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl279h14 DC082698 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL453e10ex BP722772 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxl278h15 DC082443 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3380588 BE491657 3' X. laevis.S Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
XL453d09ex BP722758 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5