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Summary Expression Phenotypes Gene Literature (1) GO Terms (7) Nucleotides (297) Proteins (61) Interactants (55) Wiki
XB-GENEPAGE-984984

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for col5a3 - All

RefSeq mRNAs(12)
Models - Gene (22)
Models - mRNA (33)
mRNAs (13)
ESTs (211)

RefSeq mRNAs (12)

Accession Version Protein Name Length Protein Species
XM_031901022 XM_031901022.1 XP_031756882.1 collagen alpha-1(XI) chain isoform X1 7666 bp XP_031756882 X. tropicalis
XM_031901023 XM_031901023.1 XP_031756883.1 collagen alpha-1(XI) chain isoform X3 7341 bp XP_031756883 X. tropicalis
XM_031901024 XM_031901024.1 XP_031756884.1 collagen alpha-1(XI) chain isoform X5 7184 bp XP_031756884 X. tropicalis
XM_031901025 XM_031901025.1 XP_031756885.1 collagen alpha-1(XI) chain isoform X6 7158 bp XP_031756885 X. tropicalis
XM_031901026 XM_031901026.1 XP_031756886.1 collagen alpha-1(XI) chain isoform X7 6796 bp XP_031756886 X. tropicalis
XM_004913713 XM_004913713.3 collagen alpha-1(XI) chain isoform X2 7452 bp XP_004913770 X. tropicalis
XM_004913714 XM_004913714.4 collagen alpha-1(XI) chain isoform X4 7300 bp XP_004913771 X. tropicalis
XM_018253662 XM_018253662.2 collagen alpha-1(XI) chain isoform X1 14596 bp XP_018109151 X. laevis.L
XM_018253663 XM_018253663.2 collagen alpha-1(XI) chain isoform X3 14409 bp XP_018109152 X. laevis.L
XM_018256276 XM_018256276.2 collagen alpha-1(XI) chain isoform X1 5829 bp XP_018111765 X. laevis.S
XM_018256277 XM_018256277.2 collagen alpha-1(XI) chain isoform X2 5643 bp XP_018111766 X. laevis.S
XM_041587221 XM_041587221.1 XP_041443155.1 collagen alpha-1(XI) chain isoform X2 14332 bp XP_041443155 X. laevis.L

Models - Gene (22)

Source Version Model Species
NCBI 10.0 XBXT10g004184 X. tropicalis
NCBI 10.1 XBXL10_1g17017 X. laevis.S
NCBI 10.1 XBXL10_1g14121 X. laevis.L
ENSEMBL 10.0 col5a3 X. tropicalis
Xenbase 9.1 gene21451 X. tropicalis
Xenbase 9.2 gene48858 X. laevis.S
Xenbase 9.2 gene7731 X. laevis.L
ENSEMBL 9.1 col5a3 X. tropicalis
JGI 7.1 Xetro.K00089 X. tropicalis
JGI 4.1 e_gw1.92.14.1 X. tropicalis
JGI 4.1 e_gw1.92.15.1 X. tropicalis
JGI 4.1 e_gw1.92.230.1 X. tropicalis
JGI 4.1 e_gw1.92.83.1 X. tropicalis
JGI 4.1 gw1.92.14.1 X. tropicalis
JGI 4.1 gw1.92.15.1 X. tropicalis
JGI 4.1 gw1.92.230.1 X. tropicalis
JGI 4.1 gw1.92.83.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_920009 X. tropicalis
JGI 4.1 estExt_Genewise1.C_920083 X. tropicalis
JGI 4.1 estExt_Genewise1.C_920230 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_920020 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_92000021 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.0 mRNA020934 X. tropicalis
NCBI 10.1 XBmRNA26648 X. laevis.L
NCBI 10.1 XBmRNA31613 X. laevis.S
ENSEMBL 10.0 ENSXETT00000099831 X. tropicalis
ENSEMBL 10.0 ENSXETT00000101512 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082392 X. tropicalis
ENSEMBL 10.0 ENSXETT00000027846 X. tropicalis
ENSEMBL 10.0 ENSXETT00000096866 X. tropicalis
Xenbase 9.2 rna22583 X. laevis.L
Xenbase 9.2 rna94622 X. laevis.S
Xenbase 9.1 rna43863 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096866 X. tropicalis
ENSEMBL 9.1 ENSXETT00000099831 X. tropicalis
ENSEMBL 9.1 ENSXETT00000101512 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082392 X. tropicalis
ENSEMBL 9.1 ENSXETT00000027846 X. tropicalis
ENSEMBL 9.1 ENSXETT00000099252 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071373 X. tropicalis
ENSEMBL 9.1 ENSXETT00000023717 X. tropicalis
JGI 7.1 Xetro.K00089.1 X. tropicalis
JGI 4.1 e_gw1.92.83.1 X. tropicalis
JGI 4.1 e_gw1.92.14.1 X. tropicalis
JGI 4.1 e_gw1.92.15.1 X. tropicalis
JGI 4.1 e_gw1.92.230.1 X. tropicalis
JGI 4.1 gw1.92.14.1 X. tropicalis
JGI 4.1 gw1.92.15.1 X. tropicalis
JGI 4.1 gw1.92.230.1 X. tropicalis
JGI 4.1 gw1.92.83.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_920009 X. tropicalis
JGI 4.1 estExt_Genewise1.C_920083 X. tropicalis
JGI 4.1 estExt_Genewise1.C_920230 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_920020 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_92000021 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
TTpA004p20 CR848238 X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
XM_004913714 X. tropicalis
XM_004913713 X. tropicalis
XM_031901026 X. tropicalis
XM_031901025 X. tropicalis
XM_031901024 X. tropicalis
XM_031901023 X. tropicalis
XM_031901022 X. tropicalis
XM_018256277 X. laevis.S
XM_018256276 X. laevis.S
XM_018253663 X. laevis.L
XM_018253662 X. laevis.L
XM_041587221 X. laevis.L

ESTs (211)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8904220 EL795176 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8907174 EL800499 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8855407 EL817412 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8886191 EL842719 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8886552 EL843840 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8869454 EL710479 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8869830 EL711110 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8870406 EL711810 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8863447 EL712745 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8871948 EL714693 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867458 EL706708 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867416 EL706749 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867560 EL706754 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8863048 EL708648 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8869032 EL709755 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864675 EL701068 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865370 EL702818 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865426 EL702878 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866123 EL703655 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867671 EL706532 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
xtbs32G21 CN089712 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:8933875 EL635102 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8938129 EL641187 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8863645 EL700051 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
XZT13459 CX321812 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT3589 CX399058 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT3887 CX399537 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT4985 CX413793 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT5106 CX413998 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st103i15 DC191386 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7788061 CX332961 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7789391 CX334954 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7789634 CX322741 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT1312 CX360440 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT12615 CX321075 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT13308 CX321575 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7632873 CX373900 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7634398 CX337866 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7635063 CX338645 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7637651 CX407638 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7639561 CX385112 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7785376 CX316496 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7785669 CX316830 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7787049 CX329231 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619678 CX347569 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7620160 CX340708 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7621146 CX341888 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7627264 CX381056 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7628244 CX382269 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7628262 CX382376 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7629586 CX369489 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7630110 CX370062 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7630943 CX371030 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7632066 CX398039 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609136 CX410204 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611233 CX378199 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611276 CX378426 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7612799 CX405400 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613775 CX389142 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7614501 CX390284 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7594972 CX332102 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7618704 CX345838 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7595469 CX335504 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7595895 CX336024 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7596884 CX337346 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7598876 CX343524 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7601176 CX364523 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602688 CX393748 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7603853 CX395549 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7604322 CX411479 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7606421 CX366363 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7617569 DR897342 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7617350 DR897409 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7692878 CX919470 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7608606 DR894761 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7584262 CX415024 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7792828 CX814021 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7654700 CX824478 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA008h17 CR562692 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA009k22 CR564922 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA019f23 CR571943 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA042j13 CR579316 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA036e10 CR581120 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA006i15 CR411580 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA008c12 CR411653 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA005o13 CR416966 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA059j03 CR430113 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA056m20 CR440298 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA002l19 CR447410 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA001m11 CR560876 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA012d06 CR562370 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA077a21 BX737205 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA060c01 BX737835 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA077b18 BX738020 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA055e11 BX740807 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xthr15D03 CN098998 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTbA006b02 CR410558 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA078i03 BX722081 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA051h02 BX724138 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40