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Summary Expression Phenotypes Gene Literature (0) GO Terms (8) Nucleotides (230) Proteins (49) Interactants (10) Wiki
XB-GENEPAGE-974049

Show:     All X. tropicalis X. laevis

Nucleotide sequences for trir - All

RefSeq mRNAs(6)
Models - Gene (20)
Models - mRNA (26)
mRNAs (12)
ESTs (131)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
NM_001126585 NM_001126585.1 telomerase RNA component interacting RNase 1490 bp NP_001120057 X. tropicalis
XM_012964271 XM_012964271.3 telomerase RNA component interacting RNase isoform X1 1571 bp XP_012819725 X. tropicalis
NM_001096067 NM_001096067.1 uncharacterized protein LOC734591 1323 bp NP_001089536 X. laevis.L
XM_018251221 XM_018251221.2 uncharacterized protein LOC734591 isoform X1 1027 bp XP_018106710 X. laevis.L
XM_018239642 XM_018239642.2 telomerase RNA component interacting RNase isoform X1 1756 bp XP_018095131 X. laevis.S
XM_018239643 XM_018239643.2 telomerase RNA component interacting RNase isoform X2 1657 bp XP_018095132 X. laevis.S

Models - Gene (20)

Source Version Model Species
NCBI 10.1 XBXL10_1g17202 X. laevis.S
NCBI 10.1 XBXL10_1g14247 X. laevis.L
NCBI 10.0 XBXT10g004917 X. tropicalis
ENSEMBL 10.0 trir X. tropicalis
Xenbase 9.2 gene4726 X. laevis.L
Xenbase 9.2 gene8421 X. laevis.S
JGI 9.1 Xelaev18019086m.g X. laevis.L
JGI 9.1 Xelaev18000815m.g X. laevis.S
Xenbase 9.1 gene2968 X. tropicalis
ENSEMBL 9.1 trir X. tropicalis
JGI 8.0 Xetrov14044108m.g X. tropicalis
JGI 7.2 Xelaev16062226m.g X. laevis.L
JGI 7.1 Xetro.F01611 X. tropicalis
JGI 6.0 XeXenL6RMv10045880m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000004768 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3770006 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3770013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3770016 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_377000016 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_377000006 X. tropicalis

mRNAs based on gene models(26)

Source Version Model Species
NCBI 10.1 XBmRNA31892 X. laevis.S
NCBI 10.1 XBmRNA26877 X. laevis.L
NCBI 10.0 mRNA024430 X. tropicalis
ENSEMBL 10.0 ENSXETT00000010334 X. tropicalis
Xenbase 9.2 rna13809 X. laevis.L
Xenbase 9.2 rna24515 X. laevis.S
ENSEMBL 9.1 ENSXETT00000010334 X. tropicalis
JGI 9.1 Xelaev18019086m X. laevis.L
Xenbase 9.1 rna9717 X. tropicalis
JGI 9.1 Xelaev18000815m X. laevis.S
JGI 8.0 Xetrov14044108m X. tropicalis
JGI 7.2 Xelaev16062226m X. laevis.L
JGI 7.1 Xetro.F01611.4 X. tropicalis
JGI 7.1 Xetro.F01611.1 X. tropicalis
JGI 7.1 Xetro.F01611.2 X. tropicalis
JGI 7.1 Xetro.F01611.3 X. tropicalis
JGI 7.1 Xetro.F01611.5 X. tropicalis
JGI 7.1 Xetro.F01611.6 X. tropicalis
JGI 7.1 Xetro.F01611.7 X. tropicalis
JGI 6.0 XeXenL6RMv10045880m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_377000016 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_377000006 X. tropicalis
ENSEMBL 4.1 ENSXETT00000010334 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3770013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3770016 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_3770006 X. tropicalis

mRNAs from cDNA libraries (12)

Clone Accession Species Library Anatomy Stage
IMAGE:7585009 BC135272 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6995290 BC158437 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TNeu137f12 CR942708 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001126585 X. tropicalis
XM_012964271 X. tropicalis
IMAGE:3377960 BC097823 X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
NM_001096067 X. laevis.L
XM_018251221 X. laevis.L
IMAGE:4057143 BC085227 X. laevis.S
IMAGE:7981224 BC106411 X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XM_018239642 X. laevis.S
XM_018239643 X. laevis.S

ESTs (131)

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu075c05 BX683497 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5383957 BQ396627 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6995290 CF239155 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7667365 CX853878 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7666781 CX852506 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:5379779 BQ523990 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7585009 CX415802 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7603816 CX395349 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611450 CX378332 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602294 CX365723 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619046 CX346475 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7788696 CX334363 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA049o15 CR432656 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas020c21 AL632489 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas048g10 AL646229 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas038l19 AL648248 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas063b05 AL675217 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas064b05 AL675310 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas071h13 AL773724 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas100m13 AL956157 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas111j19 AL963979 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119g09 AL969919 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7513805 CX743079 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:8932426 EL668409 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7714083 CX973005 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7533665 CX427497 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7530450 CX419632 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAO9275 CX957504 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO4420 CX935517 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7668448 CX874627 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:6987015 CF221530 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6986909 CF221643 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:8965055 EL661553 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
st12d22 DC166260 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st13p05 DC166774 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st22n10 DC169620 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st26f15 DC170607 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st9n19 DC175821 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st42p08 DC177380 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st45p13 DC178090 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st48k03 DC178715 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st59m10 DC181364 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st60c20 DC181455 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st65p06 DC182911 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st69d22 DC183745 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st83h12 DC187339 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st86g20 DC188060 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st97i10 DC192105 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st111l18 DC194824 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu064j05 AL783516 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu075c05 AL785676 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu137f12 AL786105 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:9017719 EL865904 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8882992 EL838460 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7512983 CX742120 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
rst111l18 DC164189 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7512983 CX742119 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7513805 CX743078 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
rst12d22 DC136194 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst13p05 DC136697 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst18m23 DC138122 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst22n10 DC139462 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst23n10 DC139754 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst26f15 DC140447 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst9n19 DC145520 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst42p08 DC147098 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst45p13 DC147804 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst48k03 DC148439 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst59m10 DC151093 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst60c20 DC151190 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst65p06 DC152682 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst69d22 DC153548 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst83h12 DC157213 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst86g20 DC157938 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst90m07 DC159030 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst97i10 DC162127 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu064j05 BX687168 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu081o17 BX694251 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5383957 BQ396626 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TGas064b05 BX745571 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas071h13 BX751149 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119g09 BX756401 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7788696 CX334362 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619046 CX346474 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602294 CX365722 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611450 CX378331 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7603816 CX395348 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7585009 CX415801 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:5379779 BQ523989 3' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7667365 CX853877 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7668448 CX874626 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7672403 CX880804 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
CAAO4420 CX935516 3' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO9275 CX957503 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7714083 CX973004 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:9017719 EL865905 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7981224 DR723940 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL194c10 BJ620672 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL177j12 BJ616622 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL451a21ex BP686365 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL494j09ex BP708434 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk101p06ex DC036254 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk1h03ex DC053097 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk64p21ex DC055819 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk166l18ex DC066251 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8318820 DY561968 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:3377960 BE506832 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:7980146 DR722588 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7976706 DR714505 5' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
PBX0100F06 AW640947 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0089B12 AW639962 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL047g02 BJ040719 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3437673 BG730287 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
XL038i04 BJ039786 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:8532969 EB475590 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
XL031a12 BJ034835 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3437776 BG730237 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
XL030p05 BJ034808 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3380307 BE507114 5' X. laevis.L Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
XL065e20 BJ060274 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL073h05 BJ061585 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL063k10 BJ078275 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL194c10 BJ637366 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3377960 BE189499 3' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:7976706 DR714510 3' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
XL065e20 BJ078496 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL073h05 BJ079766 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxlk166l18ex DC032684 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL038i04 BJ053343 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
rxlk101p06ex DC003376 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5