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Summary Expression Phenotypes Gene Literature (12) GO Terms (58) Nucleotides (102) Proteins (39) Interactants (450) Wiki
XB-GENEPAGE-964442

Show:     All X. tropicalis X. laevis

Nucleotide sequences for lig4 - All

RefSeq mRNAs(2)
Models - Gene (28)
Models - mRNA (29)
mRNAs (6)
ESTs (20)

RefSeq mRNAs (2)

Accession Version Protein Name Length Protein Species
NM_001016981 NM_001016981.2 DNA ligase 4 3141 bp NP_001016981 X. tropicalis
NM_001087645 NM_001087645.1 DNA ligase (ATP) 4 3181 bp NP_001081114 X. laevis.L

Models - Gene (28)

Source Version Model Species
NCBI 10.1 XBXL10_1g7825 X. laevis.L
NCBI 10.0 XBXT10g009011 X. tropicalis
ENSEMBL 10.0 lig4 X. tropicalis
Xenbase 9.2 gene8620 X. laevis.L
JGI 9.1 Xelaev18013078m.g X. laevis.L
Xenbase 9.1 gene1299 X. tropicalis
ENSEMBL 9.1 lig4 X. tropicalis
JGI 8.0 Xetrov14009474m.g X. tropicalis
JGI 7.2 Xelaev16054967m.g X. laevis.L
JGI 7.1 Xetro.B01649 X. tropicalis
JGI 6.0 XeXenL6RMv10041383m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000002654 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_42000006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420093 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_42000048 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_42000019 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_42000007 X. tropicalis
JGI 4.1 e_gw1.42.158.1 X. tropicalis
JGI 4.1 e_gw1.42.95.1 X. tropicalis
JGI 4.1 e_gw1.42.96.1 X. tropicalis
JGI 4.1 gw1.42.158.1 X. tropicalis
JGI 4.1 gw1.42.95.1 X. tropicalis
JGI 4.1 gw1.42.96.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_420028 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420094 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420155 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_420047 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_420019 X. tropicalis

mRNAs based on gene models(29)

Source Version Model Species
NCBI 10.1 XBmRNA14742 X. laevis.L
ENSEMBL 10.0 ENSXETT00000114898 X. tropicalis
ENSEMBL 10.0 ENSXETT00000005699 X. tropicalis
NCBI 10.0 mRNA044648 X. tropicalis
Xenbase 9.2 rna25096 X. laevis.L
JGI 9.1 Xelaev18013078m X. laevis.L
ENSEMBL 9.1 ENSXETT00000005699 X. tropicalis
Xenbase 9.1 rna4164 X. tropicalis
JGI 8.0 Xetrov14009474m X. tropicalis
JGI 7.2 Xelaev16054967m X. laevis.L
JGI 7.1 Xetro.B01649.1 X. tropicalis
JGI 6.0 XeXenL6RMv10041383m X. laevis.L
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_42000006 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_42000007 X. tropicalis
JGI 4.1 gw1.42.158.1 X. tropicalis
JGI 4.1 gw1.42.95.1 X. tropicalis
JGI 4.1 gw1.42.96.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_42000019 X. tropicalis
JGI 4.1 e_gw1.42.95.1 X. tropicalis
JGI 4.1 e_gw1.42.96.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000005699 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_420047 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_420019 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_420028 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420093 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420094 X. tropicalis
JGI 4.1 estExt_Genewise1.C_420155 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_42000048 X. tropicalis
JGI 4.1 e_gw1.42.158.1 X. tropicalis

mRNAs from cDNA libraries (6)

Clone Accession Species Library Anatomy Stage
IMAGE:7615689 BC135341 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu022j24 CR848338 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001016981 X. tropicalis
AF393656 X. laevis.L
IMAGE:6957895 BC074385 X. laevis.L
NM_001087645 X. laevis.L

ESTs (20)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8927067 EL674022 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
TNeu022j24 AL639166 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu120p13 AL792089 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA070l20 CR426645 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA032f13 BX717731 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7615689 CX391890 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7641313 CX794778 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7641313 CX794777 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
TTbA070l20 CR426646 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7615689 CX391889 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8927067 EL674021 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
PBX0095G12 AW640499 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0101B04 AW640989 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0154E01 AW645661 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3745685 BE680472 5' X. laevis.L Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
XL489l23ex BP700137 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL038b12 BJ039649 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
PBX0056A03 AW637219 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:4203523 BG579714 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL038b12 BJ053211 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15