Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (42) GO Terms (5) Nucleotides (125) Proteins (86) Interactants (213) Wiki
XB-GENEPAGE-961276

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for trim9 - All

RefSeq mRNAs(3)
Models - Gene (32)
Models - mRNA (43)
mRNAs (18)
ESTs (2)

RefSeq mRNAs (3)

Accession Version name Length Protein Species
XM_041573053 XM_041573053.1 XP_041428987.1 E3 ubiquitin-protein ligase TRIM9 isoform X6 7087 bp XP_041428987 X. laevis.L
XM_041573051 XM_041573051.1 XP_041428985.1 E3 ubiquitin-protein ligase TRIM9 isoform X2 7203 bp XP_041428985 X. laevis.L
XM_041573052 XM_041573052.1 XP_041428986.1 E3 ubiquitin-protein ligase TRIM9 isoform X3 7190 bp XP_041428986 X. laevis.L

Models - Gene (32)

Source Version Model Species
NCBI 10.0 XBXT10g018773 X. tropicalis
NCBI 10.1 XBXL10_1g35897 X. laevis.L
NCBI 10.1 XBXL10_1g37278 X. laevis.S
ENSEMBL 10.0 trim9 X. tropicalis
JGI 9.1 Xelaev18039675m.g X. laevis.L
JGI 9.1 Xelaev18041209m.g X. laevis.S
Xenbase 9.1 gene18104 X. tropicalis
Xenbase 9.2 gene18197 X. laevis.L
Xenbase 9.2 gene1569 X. laevis.S
ENSEMBL 9.1 trim9 X. tropicalis
JGI 6.0 XeXenL6RMv10019138m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000016487 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_222000016 X. tropicalis
JGI 4.1 e_gw1.222.107.1 X. tropicalis
JGI 4.1 e_gw1.222.125.1 X. tropicalis
JGI 4.1 e_gw1.222.2.1 X. tropicalis
JGI 4.1 e_gw1.222.31.1 X. tropicalis
JGI 4.1 e_gw1.222.37.1 X. tropicalis
JGI 4.1 e_gw1.222.38.1 X. tropicalis
JGI 4.1 e_gw1.222.61.1 X. tropicalis
JGI 4.1 e_gw1.222.67.1 X. tropicalis
JGI 4.1 e_gw1.222.73.1 X. tropicalis
JGI 4.1 gw1.222.107.1 X. tropicalis
JGI 4.1 gw1.222.125.1 X. tropicalis
JGI 4.1 gw1.222.2.1 X. tropicalis
JGI 4.1 gw1.222.67.1 X. tropicalis
JGI 4.1 gw1.222.73.1 X. tropicalis
JGI 4.1 gw1.222.31.1 X. tropicalis
JGI 4.1 gw1.222.37.1 X. tropicalis
JGI 4.1 gw1.222.38.1 X. tropicalis
JGI 4.1 gw1.222.61.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_222000046 X. tropicalis

mRNAs based on gene models(43)

Source Version Model Species
NCBI 10.0 mRNA092750 X. tropicalis
NCBI 10.1 XBmRNA67815 X. laevis.L
NCBI 10.1 XBmRNA70361 X. laevis.S
ENSEMBL 10.0 ENSXETT00000069381 X. tropicalis
ENSEMBL 10.0 ENSXETT00000035960 X. tropicalis
ENSEMBL 10.0 ENSXETT00000102939 X. tropicalis
ENSEMBL 10.0 ENSXETT00000072603 X. tropicalis
ENSEMBL 10.0 ENSXETT00000100686 X. tropicalis
ENSEMBL 10.0 ENSXETT00000100017 X. tropicalis
JGI 9.1 Xelaev18039675m X. laevis.L
JGI 9.1 Xelaev18041209m X. laevis.S
Xenbase 9.1 rna38647 X. tropicalis
Xenbase 9.2 rna53164 X. laevis.L
Xenbase 9.2 rna4586 X. laevis.S
ENSEMBL 9.1 ENSXETT00000069381 X. tropicalis
ENSEMBL 9.1 ENSXETT00000035960 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100686 X. tropicalis
ENSEMBL 9.1 ENSXETT00000102939 X. tropicalis
ENSEMBL 9.1 ENSXETT00000072603 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100017 X. tropicalis
JGI 6.0 XeXenL6RMv10019138m X. laevis.L
JGI 4.1 fgenesh1_pm.C_scaffold_222000016 X. tropicalis
ENSEMBL 4.1 ENSXETT00000035958 X. tropicalis
ENSEMBL 4.1 ENSXETT00000035960 X. tropicalis
JGI 4.1 e_gw1.222.107.1 X. tropicalis
JGI 4.1 e_gw1.222.125.1 X. tropicalis
JGI 4.1 e_gw1.222.2.1 X. tropicalis
JGI 4.1 e_gw1.222.31.1 X. tropicalis
JGI 4.1 e_gw1.222.37.1 X. tropicalis
JGI 4.1 e_gw1.222.38.1 X. tropicalis
JGI 4.1 e_gw1.222.61.1 X. tropicalis
JGI 4.1 e_gw1.222.67.1 X. tropicalis
JGI 4.1 e_gw1.222.73.1 X. tropicalis
JGI 4.1 gw1.222.107.1 X. tropicalis
JGI 4.1 gw1.222.125.1 X. tropicalis
JGI 4.1 gw1.222.2.1 X. tropicalis
JGI 4.1 gw1.222.67.1 X. tropicalis
JGI 4.1 gw1.222.73.1 X. tropicalis
JGI 4.1 gw1.222.31.1 X. tropicalis
JGI 4.1 gw1.222.37.1 X. tropicalis
JGI 4.1 gw1.222.38.1 X. tropicalis
JGI 4.1 gw1.222.61.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_222000046 X. tropicalis

mRNAs from cDNA libraries (18)

Clone Accession Species Library Anatomy Stage
XM_002936574 X. tropicalis
XM_004917163 X. tropicalis
XM_004917162 X. tropicalis
XM_004917161 X. tropicalis
XM_004917160 X. tropicalis
XM_018232341 X. laevis.S
XM_018232340 X. laevis.S
XM_018232339 X. laevis.S
XM_018232338 X. laevis.S
XM_018232337 X. laevis.S
XM_018230546 X. laevis.L
XM_018230545 X. laevis.L
XM_018230543 X. laevis.L
XM_018230542 X. laevis.L
XM_018230541 X. laevis.L
XM_041573053 X. laevis.L
XM_041573052 X. laevis.L
XM_041573051 X. laevis.L

ESTs (2)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas139d12 AL972955 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7641644 CX795756 3' X. tropicalis NIH_XGC_tropBrn2 brain frog