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Summary Expression Phenotypes Gene Literature (2) GO Terms (6) Nucleotides (183) Proteins (66) Interactants (204) Wiki
XB-GENEPAGE-958271

Show:     All X. tropicalis X. laevis

Nucleotide sequences for trafd1 - All

RefSeq mRNAs(8)
Models - Gene (34)
Models - mRNA (42)
mRNAs (16)
ESTs (33)

RefSeq mRNAs (8)

Accession Version Protein Name Length Protein Species
NM_001004989 NM_001004989.2 TRAF-type zinc finger domain-containing protein 1 3430 bp NP_001004989 X. tropicalis
NM_001244843 NM_001244843.1 TRAF-type zinc finger domain-containing protein 1 3505 bp NP_001231772 X. tropicalis
XM_018092226 XM_018092226.2 TRAF-type zinc finger domain-containing protein 1 isoform X1 3673 bp XP_017947715 X. tropicalis
XM_018263548 XM_018263548.2 TRAF-type zinc finger domain-containing protein 1 2763 bp XP_018119037 X. laevis.L
XM_018263559 XM_018263559.2 TRAF-type zinc finger domain-containing protein 1 2806 bp XP_018119048 X. laevis.L
XM_041580379 XM_041580379.1 XP_041436313.1 TRAF-type zinc finger domain-containing protein 1 isoform X1 2557 bp XP_041436313 X. laevis.S
XM_041580380 XM_041580380.1 XP_041436314.1 TRAF-type zinc finger domain-containing protein 1 isoform X2 2339 bp XP_041436314 X. laevis.S
XM_041580381 XM_041580381.1 XP_041436315.1 TRAF-type zinc finger domain-containing protein 1 isoform X3 2329 bp XP_041436315 X. laevis.S

Models - Gene (34)

Source Version Model Species
NCBI 10.1 XBXL10_1g5416 X. laevis.S
NCBI 10.1 XBXL10_1g2874 X. laevis.L
NCBI 10.0 XBXT10g005476 X. tropicalis
ENSEMBL 10.0 trafd1 X. tropicalis
Xenbase 9.2 gene6645 X. laevis.S
Xenbase 9.2 gene13917 X. laevis.L
JGI 9.1 Xelaev18010672m.g X. laevis.S
JGI 9.1 Xelaev18007865m.g X. laevis.L
Xenbase 9.1 gene33641 X. tropicalis
ENSEMBL 9.1 trafd1 X. tropicalis
JGI 8.0 Xetrov14001016m.g X. tropicalis
JGI 7.2 Xelaev16034000m.g X. laevis.L
JGI 7.1 Xetro.A00640 X. tropicalis
JGI 6.0 XeXenL6RMv10021759m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000026235 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_566000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_566000012 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_566000013 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_566000005 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_566000003 X. tropicalis
JGI 4.1 e_gw1.566.37.1 X. tropicalis
JGI 4.1 e_gw1.566.38.1 X. tropicalis
JGI 4.1 e_gw1.566.4.1 X. tropicalis
JGI 4.1 gw1.566.37.1 X. tropicalis
JGI 4.1 gw1.566.38.1 X. tropicalis
JGI 4.1 gw1.566.4.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_5660008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5660004 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5660037 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5660038 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_5660003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5660012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5660013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_5660005 X. tropicalis

mRNAs based on gene models(42)

Source Version Model Species
NCBI 10.1 XBmRNA10104 X. laevis.S
NCBI 10.1 XBmRNA5130 X. laevis.L
ENSEMBL 10.0 ENSXETT00000075073 X. tropicalis
ENSEMBL 10.0 ENSXETT00000055430 X. tropicalis
ENSEMBL 10.0 ENSXETT00000087036 X. tropicalis
NCBI 10.0 mRNA027182 X. tropicalis
Xenbase 9.2 rna19451 X. laevis.S
Xenbase 9.2 rna40520 X. laevis.L
Xenbase 9.1 rna63367 X. tropicalis
JGI 9.1 Xelaev18010672m X. laevis.S
ENSEMBL 9.1 ENSXETT00000055430 X. tropicalis
ENSEMBL 9.1 ENSXETT00000075073 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079940 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087036 X. tropicalis
JGI 9.1 Xelaev18007865m X. laevis.L
JGI 8.0 Xetrov14001016m X. tropicalis
JGI 7.2 Xelaev16034000m X. laevis.L
JGI 7.1 Xetro.A00640.1 X. tropicalis
JGI 7.1 Xetro.A00640.2 X. tropicalis
JGI 7.1 Xetro.A00640.3 X. tropicalis
JGI 7.1 Xetro.A00640.4 X. tropicalis
JGI 6.0 XeXenL6RMv10021759m X. laevis.L
JGI 4.1 fgenesh1_pm.C_scaffold_566000005 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_566000002 X. tropicalis
JGI 4.1 gw1.566.37.1 X. tropicalis
JGI 4.1 gw1.566.38.1 X. tropicalis
JGI 4.1 gw1.566.4.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5660004 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_5660008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_5660005 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5660013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5660012 X. tropicalis
JGI 4.1 e_gw1.566.37.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_5660003 X. tropicalis
ENSEMBL 4.1 ENSXETT00000055430 X. tropicalis
JGI 4.1 e_gw1.566.4.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5660037 X. tropicalis
JGI 4.1 e_gw1.566.38.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5660038 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_566000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_566000012 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_566000013 X. tropicalis

mRNAs from cDNA libraries (16)

Clone Accession Species Library Anatomy Stage
AL865760 X. tropicalis
AL866399 X. tropicalis
IMAGE:6992200 BC075550 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7554933 BC161309 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CF240952 X. tropicalis
TEgg001d16 CR942471 X. tropicalis
CX960166 X. tropicalis
NM_001004989 X. tropicalis
NM_001244843 X. tropicalis
XM_018092226 X. tropicalis
XR_004221854 X. tropicalis
XM_018263548 X. laevis.L
XM_018263559 X. laevis.L
XM_041580379 X. laevis.S
XM_041580380 X. laevis.S
XM_041580381 X. laevis.S

ESTs (33)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7577668 CX423641 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6989643 CF219609 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6989643 CF219610 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6992200 CF240952 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:8916592 EL830107 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
CAAO10714 CX960167 5' X. tropicalis NIH_XGC_tropTe5 testis frog
TGas027p01 AL647202 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7529190 CX426147 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7554933 CX501602 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7550542 CX509672 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7605175 CX412283 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7670281 CX877032 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7706416 CX958737 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7554933 CX501601 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7577668 CX423640 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7550542 CX509671 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAO10714 CX960166 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:8916592 EL830108 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:6992200 CF240951 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7706416 CX958736 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:3436982 BF613398 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
PBX0085G07 AW639683 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3744697 BF426627 5' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:4677790 BI314675 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998C029022 BX851292 5' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:6869494 CA980848 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6868639 CA982284 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL013k13 BJ029828 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL021p16 BJ035391 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL021p16 BJ050013 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL013k13 BJ044542 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:5278743 BQ398700 3' X. laevis.L Soares NXEG egg unfertilized egg stage
IMAGE:3744697 BG234482 3' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage