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Summary Expression Phenotypes Gene Literature (0) GO Terms (13) Nucleotides (137) Proteins (53) Interactants (18) Wiki
XB-GENEPAGE-946297

Show:     All X. tropicalis X. laevis

Nucleotide sequences for trdmt1 - All

RefSeq mRNAs(5)
Models - Gene (30)
Models - mRNA (37)
mRNAs (10)
ESTs (41)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001004959 NM_001004959.2 tRNA (cytosine(38)-C(5))-methyltransferase 1545 bp NP_001004959 X. tropicalis
XM_018094616 XM_018094616.2 tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 1373 bp XP_017950105 X. tropicalis
NM_001086204 NM_001086204.1 tRNA (cytosine(38)-C(5))-methyltransferase 1635 bp NP_001079673 X. laevis.L
XM_018266227 XM_018266227.2 tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 1596 bp XP_018121716 X. laevis.L
XM_018266229 XM_018266229.2 tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 1265 bp XP_018121718 X. laevis.L

Models - Gene (30)

Source Version Model Species
NCBI 10.1 XBXL10_1g26899 X. laevis.L
NCBI 10.0 XBXT10g014839 X. tropicalis
ENSEMBL 10.0 trdmt1 X. tropicalis
Xenbase 9.2 gene16973 X. laevis.L
JGI 9.1 Xelaev18030817m.g X. laevis.L
Xenbase 9.1 gene31233 X. tropicalis
ENSEMBL 9.1 trdmt1 X. tropicalis
JGI 8.0 Xetrov14027566m.g X. tropicalis
JGI 7.2 Xelaev16065867m.g X. laevis.L
JGI 7.1 Xetro.F01529 X. tropicalis
JGI 6.0 XeXenL6RMv10041401m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000027671 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4370009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4370010 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_437000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_437000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_437000011 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_437000004 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4370003 X. tropicalis
JGI 4.1 e_gw1.437.63.1 X. tropicalis
JGI 4.1 e_gw1.437.74.1 X. tropicalis
JGI 4.1 e_gw1.437.77.1 X. tropicalis
JGI 4.1 gw1.437.63.1 X. tropicalis
JGI 4.1 gw1.437.74.1 X. tropicalis
JGI 4.1 gw1.437.77.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4370008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4370063 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4370074 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4370077 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4370002 X. tropicalis

mRNAs based on gene models(37)

Source Version Model Species
NCBI 10.1 XBmRNA50378 X. laevis.L
ENSEMBL 10.0 ENSXETT00000057609 X. tropicalis
ENSEMBL 10.0 ENSXETT00000097195 X. tropicalis
NCBI 10.0 mRNA073344 X. tropicalis
ENSEMBL 10.0 ENSXETT00000067395 X. tropicalis
Xenbase 9.2 rna49584 X. laevis.L
ENSEMBL 9.1 ENSXETT00000097195 X. tropicalis
ENSEMBL 9.1 ENSXETT00000057609 X. tropicalis
ENSEMBL 9.1 ENSXETT00000067395 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074557 X. tropicalis
ENSEMBL 9.1 ENSXETT00000093993 X. tropicalis
Xenbase 9.1 rna59468 X. tropicalis
JGI 9.1 Xelaev18030817m X. laevis.L
JGI 8.0 Xetrov14027566m X. tropicalis
JGI 7.2 Xelaev16065867m X. laevis.L
JGI 7.1 Xetro.F01529.2 X. tropicalis
JGI 7.1 Xetro.F01529.1 X. tropicalis
JGI 6.0 XeXenL6RMv10041401m X. laevis.L
JGI 4.1 gw1.437.77.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4370074 X. tropicalis
JGI 4.1 e_gw1.437.74.1 X. tropicalis
JGI 4.1 e_gw1.437.77.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000057609 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4370002 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4370009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4370010 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4370003 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4370008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4370063 X. tropicalis
JGI 4.1 e_gw1.437.63.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4370077 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_437000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_437000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_437000011 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_437000004 X. tropicalis
JGI 4.1 gw1.437.63.1 X. tropicalis
JGI 4.1 gw1.437.74.1 X. tropicalis

mRNAs from cDNA libraries (10)

Clone Accession Species Library Anatomy Stage
IMAGE:6976850 BC075465 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
CR441108 X. tropicalis
DC181058 X. tropicalis
DT430015 X. tropicalis
NM_001004959 X. tropicalis
XM_018094616 X. tropicalis
IMAGE:5543264 BC046854 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001086204 X. laevis.L
XM_018266227 X. laevis.L
XM_018266229 X. laevis.L

ESTs (41)

Clone Accession 5'/3' Species Library Anatomy Stage
st92j05 DC189539 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7574470 CX441572 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7517694 CX749240 5' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:7610577 DR895382 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6980275 CF150179 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6989699 CF219524 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6976850 CF223347 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7618821 CX363548 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA070b04 CR441108 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7621970 CX343081 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st14m10 DC167023 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st58i15 DC181058 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst92j05 DC159476 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7574470 CX441571 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7621970 CX343080 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst93j05 DC159737 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst94j05 DC160000 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7517694 CX749239 3' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:7610577 CX377109 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst14m10 DC136949 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7618821 CX363547 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:5543264 BQ737042 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
PBX0089D02 AW639976 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0134E10 AW643935 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:4678458 BI477725 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:8319438 DY560443 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
xl335a02 DC133519 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL155e24 BJ096842 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL216h14 BJ626938 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
xlk58m16ex DC035251 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
PBX0046D07 AW636415 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998O0912243 BX851568 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL073g21 BJ061578 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL218e23 BJ643803 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL216h14 BJ643284 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL155e24 BJ099877 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
rxl335a02 DC097491 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:4678458 BI445712 3' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL100m21 BJ084879 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL073g21 BJ079760 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxlk58m16ex DC002408 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5