Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (1) GO Terms (3) Nucleotides (202) Proteins (54) Interactants (83) Wiki
XB-GENEPAGE-946142

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for sptlc2 - All

RefSeq mRNAs(2)
Models - Gene (28)
Models - mRNA (40)
mRNAs (7)
ESTs (82)

RefSeq mRNAs (2)

Accession Version name Length Protein Species
NM_001092294 NM_001092294.1 serine palmitoyltransferase, long chain base subunit 2 S homeolog 3836 bp NP_001085763 X. laevis.S
XM_041572975 XM_041572975.1 XP_041428909.1 serine palmitoyltransferase 2 isoform X1 3271 bp XP_041428909 X. laevis.L

Models - Gene (28)

Source Version Model Species
NCBI 10.0 XBXT10g000766 X. tropicalis
NCBI 10.1 XBXL10_1g37399 X. laevis.S
NCBI 10.1 XBXL10_1g35735 X. laevis.L
ENSEMBL 10.0 sptlc2 X. tropicalis
JGI 9.1 Xelaev18041357m.g X. laevis.S
JGI 9.1 Xelaev18039489m.g X. laevis.L
Xenbase 9.1 gene1520 X. tropicalis
Xenbase 9.2 gene7883 X. laevis.S
Xenbase 9.2 gene6926 X. laevis.L
ENSEMBL 9.1 sptlc2 X. tropicalis
JGI 8.0 Xetrov14034440m.g X. tropicalis
JGI 7.1 Xetro.H01190 X. tropicalis
JGI 7.2 Xelaev16039070m.g X. laevis.S
JGI 6.0 XeXenL6RMv10020042m.g X. laevis.S
JGI 6.0 XeXenL6RMv10027647m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000011085 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_416000008 X. tropicalis
JGI 4.1 e_gw1.416.33.1 X. tropicalis
JGI 4.1 e_gw1.416.42.1 X. tropicalis
JGI 4.1 e_gw1.416.57.1 X. tropicalis
JGI 4.1 e_gw1.416.76.1 X. tropicalis
JGI 4.1 gw1.416.33.1 X. tropicalis
JGI 4.1 gw1.416.42.1 X. tropicalis
JGI 4.1 gw1.416.57.1 X. tropicalis
JGI 4.1 gw1.416.76.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_416000023 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_416000024 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_416000007 X. tropicalis

mRNAs based on gene models(40)

Source Version Model Species
NCBI 10.0 mRNA003818 X. tropicalis
NCBI 10.1 XBmRNA67465 X. laevis.L
NCBI 10.1 XBmRNA70596 X. laevis.S
ENSEMBL 10.0 ENSXETT00000079650 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082162 X. tropicalis
ENSEMBL 10.0 ENSXETT00000110243 X. tropicalis
JGI 9.1 Xelaev18039489m X. laevis.L
JGI 9.1 Xelaev18041357m X. laevis.S
Xenbase 9.1 rna4954 X. tropicalis
Xenbase 9.2 rna20239 X. laevis.L
Xenbase 9.2 rna23002 X. laevis.S
ENSEMBL 9.1 ENSXETT00000094020 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082162 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082101 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095826 X. tropicalis
ENSEMBL 9.1 ENSXETT00000093224 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094418 X. tropicalis
ENSEMBL 9.1 ENSXETT00000093432 X. tropicalis
ENSEMBL 9.1 ENSXETT00000024212 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079274 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079650 X. tropicalis
JGI 8.0 Xetrov14034440m X. tropicalis
JGI 7.1 Xetro.H01190.1 X. tropicalis
JGI 7.1 Xetro.H01190.2 X. tropicalis
JGI 7.2 Xelaev16039070m X. laevis.S
JGI 6.0 XeXenL6RMv10020042m X. laevis.S
JGI 6.0 XeXenL6RMv10027647m X. laevis.S
JGI 4.1 fgenesh1_kg.C_scaffold_416000008 X. tropicalis
ENSEMBL 4.1 ENSXETT00000024212 X. tropicalis
JGI 4.1 e_gw1.416.33.1 X. tropicalis
JGI 4.1 e_gw1.416.42.1 X. tropicalis
JGI 4.1 e_gw1.416.57.1 X. tropicalis
JGI 4.1 e_gw1.416.76.1 X. tropicalis
JGI 4.1 gw1.416.33.1 X. tropicalis
JGI 4.1 gw1.416.42.1 X. tropicalis
JGI 4.1 gw1.416.57.1 X. tropicalis
JGI 4.1 gw1.416.76.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_416000023 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_416000024 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_416000007 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
TGas141g16 CT030467 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7690640 BC166208 X. tropicalis NIH_XGC_tropTe4 testis frog
XM_002938869 X. tropicalis
IMAGE:5511826 BC073312 X. laevis.S
NM_001092294 X. laevis.S
XM_018230373 X. laevis.L
XM_041572975 X. laevis.L

ESTs (82)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8965763 EL657283 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
XZT11605 CX311909 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7577181 CX422607 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546277 CX499477 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7614535 CX390201 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAN12281 CX928863 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7739854 DN029818 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7738322 DN027016 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7717902 CX980117 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7693176 CX920255 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690640 CX915677 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7652465 CX815339 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA010d16 CR567503 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA080c02 CR442850 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA055e09 CR431883 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA077d07 CR429123 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas141g16 AL964530 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas093a12 AL962253 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas116k15 AL960850 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas047i05 AL650868 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA068b21 BX735602 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA044f01 BX721064 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA015m24 BX715382 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu128m20 AL799356 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu106a20 AL796133 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu134k09 AL789822 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas065l14 AL682940 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
XZT11605 CX311908 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAN12281 CX928862 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7652465 CX815338 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7739854 DN029817 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7738322 DN027015 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7717902 CX980116 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7693176 CX920254 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690640 CX915676 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7546277 CX499476 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7552167 CX494252 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7614535 CX390200 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA010d16 CR567504 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA080c02 CR442851 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA055e09 CR431884 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA077d07 CR429124 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas141e16 BX764943 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas116k15 BX755902 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas077a12 AL964280 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas065l14 BX745808 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA068b21 BX735603 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA021p11 BX731595 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA044f01 BX721065 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu134k09 BX699661 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu106a20 BX691177 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xl300j19 DC123239 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl262n05 DC112589 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk79a16ex DC060647 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8527779 EB464185 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
XL404j16ex BP685866 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL505j01ex BP702581 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL407g10ex BP696434 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL429e21ex BP678261 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL145m22 BJ094541 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL066n12 BJ060791 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL045k01 BJ038839 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL042k20 BJ038172 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL013k11 BJ029826 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:6936800 CD100322 5' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:6862853 CA986536 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6636018 BU910233 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6632598 BU907425 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:4724961 BQ732027 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
PBX0159A11 AW646025 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0084B05 AW639537 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:2942089 AW460802 5' X. laevis.S Xenla 13LiCl whole organism NF stage 13
rxl300j19 DC088372 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxlk79a16ex DC027173 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL505j01ex BP735517 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL407g10ex BP730157 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL404j16ex BP721730 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL429e21ex BP715285 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL066n12 BJ079007 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL042k20 BJ052780 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL045k01 BJ050783 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL013k11 BJ044540 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15