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Summary Expression Phenotypes Gene Literature (8) GO Terms (46) Nucleotides (146) Proteins (50) Interactants (345) Wiki
XB-GENEPAGE-942993

Show:     All X. tropicalis X. laevis

Nucleotide sequences for irf1 - All

RefSeq mRNAs(4)
Models - Gene (29)
Models - mRNA (32)
mRNAs (7)
ESTs (41)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001006694 NM_001006694.1 interferon regulatory factor 1 1921 bp NP_001006695 X. tropicalis
NM_001089781 NM_001089781.1 interferon regulatory factor 1 L homeolog 1998 bp NP_001083250 X. laevis.L
NM_001092119 NM_001092119.1 interferon regulatory factor 1 S homeolog 2112 bp NP_001085588 X. laevis.S
XM_041587616 XM_041587616.1 XP_041443550.1 interferon regulatory factor 1 S homeolog isoform X1 2262 bp XP_041443550 X. laevis.S

Models - Gene (29)

Source Version Model Species
NCBI 10.1 XBXL10_1g16530 X. laevis.S
NCBI 10.1 XBXL10_1g12242 X. laevis.L
NCBI 10.0 XBXT10g013737 X. tropicalis
ENSEMBL 10.0 irf1 X. tropicalis
Xenbase 9.2 gene37271 X. laevis.S
Xenbase 9.2 gene10151 X. laevis.L
JGI 9.1 Xelaev18017156m.g X. laevis.L
JGI 9.1 Xelaev18021488m.g X. laevis.S
Xenbase 9.1 gene2976 X. tropicalis
ENSEMBL 9.1 irf1 X. tropicalis
JGI 8.0 Xetrov14015414m.g X. tropicalis
JGI 7.2 Xelaev16023841m.g X. laevis.L
JGI 7.1 Xetro.C01357 X. tropicalis
JGI 6.0 XeXenL6RMv10001272m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000016586 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_93000042 X. tropicalis
JGI 4.1 e_gw1.93.76.1 X. tropicalis
JGI 4.1 e_gw1.93.77.1 X. tropicalis
JGI 4.1 e_gw1.93.78.1 X. tropicalis
JGI 4.1 gw1.93.76.1 X. tropicalis
JGI 4.1 gw1.93.77.1 X. tropicalis
JGI 4.1 gw1.93.78.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_930014 X. tropicalis
JGI 4.1 estExt_Genewise1.C_930076 X. tropicalis
JGI 4.1 estExt_Genewise1.C_930077 X. tropicalis
JGI 4.1 estExt_Genewise1.C_930078 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_930003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_930042 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_93000003 X. tropicalis

mRNAs based on gene models(32)

Source Version Model Species
NCBI 10.1 XBmRNA31041 X. laevis.S
NCBI 10.1 XBmRNA22889 X. laevis.L
ENSEMBL 10.0 ENSXETT00000036165 X. tropicalis
NCBI 10.0 mRNA067940 X. tropicalis
ENSEMBL 10.0 ENSXETT00000121768 X. tropicalis
Xenbase 9.2 rna29522 X. laevis.L
Xenbase 9.2 rna77946 X. laevis.S
Xenbase 9.1 rna9752 X. tropicalis
JGI 9.1 Xelaev18021488m X. laevis.S
JGI 9.1 Xelaev18017156m X. laevis.L
ENSEMBL 9.1 ENSXETT00000036165 X. tropicalis
JGI 8.0 Xetrov14015414m X. tropicalis
JGI 7.2 Xelaev16023841m X. laevis.L
JGI 7.1 Xetro.C01357.3 X. tropicalis
JGI 7.1 Xetro.C01357.1 X. tropicalis
JGI 7.1 Xetro.C01357.2 X. tropicalis
JGI 6.0 XeXenL6RMv10001272m X. laevis.L
JGI 4.1 gw1.93.77.1 X. tropicalis
JGI 4.1 e_gw1.93.77.1 X. tropicalis
JGI 4.1 e_gw1.93.78.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000036165 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_930003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_930042 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_930014 X. tropicalis
JGI 4.1 estExt_Genewise1.C_930076 X. tropicalis
JGI 4.1 estExt_Genewise1.C_930077 X. tropicalis
JGI 4.1 estExt_Genewise1.C_930078 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_93000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_93000042 X. tropicalis
JGI 4.1 gw1.93.76.1 X. tropicalis
JGI 4.1 e_gw1.93.76.1 X. tropicalis
JGI 4.1 gw1.93.78.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:7007367 BC075398 X. tropicalis
NM_001006694 X. tropicalis
IMAGE:4033200 BC059984 X. laevis.L
NM_001089781 X. laevis.L
IMAGE:4965534 BC072984 X. laevis.S
NM_001092119 X. laevis.S
XM_041587616 X. laevis.S

ESTs (41)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8871278 EL713973 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7615931 CX392478 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6998887 CF345059 5' X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:6998887 CF345060 5' X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:7737300 DN024769 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7710846 CX966933 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7720446 CX994909 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7713653 CX971621 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7719847 CX983465 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7717770 CX979518 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7717244 CX978827 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7715355 CX974915 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
TTpA044n03 BX721130 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:8924792 EL670569 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7720446 CX994908 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:5307280 BQ388687 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
rst63k17 DC152086 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst64k17 DC152347 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTpA044n03 BX721131 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7615931 CX392477 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7710846 CX966932 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7713653 CX971620 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7715355 CX974914 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7717244 CX978826 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7717770 CX979517 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7719847 CX983464 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:8871278 EL713972 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7737300 DN024768 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:8924792 EL670568 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8530750 EB479824 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
XL074h19 BJ061933 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4203456 BG552862 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:8825336 EG568198 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
XL012o21 BJ029594 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:6931269 CB942218 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGp998N019551 BX843527 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:8644342 EB728140 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
XL074h19 BJ080099 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL012o21 BJ044317 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:4203456 BG579636 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL002k11 BJ044967 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15