Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (2) Nucleotides (96) Proteins (44) Interactants (80) Wiki
XB-GENEPAGE-941636

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for opa3 - All

RefSeq mRNAs(1)
Models - Gene (33)
Models - mRNA (33)
mRNAs (4)
ESTs (9)

RefSeq mRNAs (1)

Accession Version name Length Protein Species
NM_001094483 optic atrophy 3 protein homolog 702 bp NP_001087952 X. laevis.S

Models - Gene (33)

Source Version Model Species
NCBI 10.0 XBXT10g004345 X. tropicalis
NCBI 10.1 XBXL10_1g38200 X. laevis.S
NCBI 10.1 XBXL10_1g35347 X. laevis.L
ENSEMBL 10.0 opa3 X. tropicalis
JGI 9.1 Xelaev18042364m.g X. laevis.S
JGI 9.1 Xelaev18039064m.g X. laevis.L
Xenbase 9.1 gene4862 X. tropicalis
Xenbase 9.2 gene11280 X. laevis.S
Xenbase 9.2 gene1989 X. laevis.L
ENSEMBL 9.1 opa3 X. tropicalis
JGI 8.0 Xetrov14033725m.g X. tropicalis
JGI 7.1 Xetro.H00925 X. tropicalis
JGI 7.2 Xelaev16008317m.g X. laevis.S
JGI 6.0 XeXenL6RMv10007552m.g X. laevis.S
JGI 6.0 XeXenL6RMv10019713m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000018240 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_31000027 X. tropicalis
JGI 4.1 e_gw1.31.142.1 X. tropicalis
JGI 4.1 e_gw1.31.151.1 X. tropicalis
JGI 4.1 e_gw1.31.160.1 X. tropicalis
JGI 4.1 e_gw1.31.163.1 X. tropicalis
JGI 4.1 e_gw1.31.164.1 X. tropicalis
JGI 4.1 e_gw1.31.167.1 X. tropicalis
JGI 4.1 gw1.31.142.1 X. tropicalis
JGI 4.1 gw1.31.151.1 X. tropicalis
JGI 4.1 gw1.31.160.1 X. tropicalis
JGI 4.1 gw1.31.163.1 X. tropicalis
JGI 4.1 gw1.31.164.1 X. tropicalis
JGI 4.1 gw1.31.167.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_31000015 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000106 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000107 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_31000033 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.0 mRNA021669 X. tropicalis
NCBI 10.1 XBmRNA66707 X. laevis.L
NCBI 10.1 XBmRNA72165 X. laevis.S
ENSEMBL 10.0 ENSXETT00000039553 X. tropicalis
JGI 9.1 Xelaev18039064m X. laevis.L
JGI 9.1 Xelaev18042364m X. laevis.S
Xenbase 9.1 rna15843 X. tropicalis
Xenbase 9.2 rna5791 X. laevis.L
Xenbase 9.2 rna32806 X. laevis.S
ENSEMBL 9.1 ENSXETT00000039553 X. tropicalis
JGI 8.0 Xetrov14033725m X. tropicalis
JGI 7.1 Xetro.H00925.1 X. tropicalis
JGI 7.2 Xelaev16008317m X. laevis.S
JGI 6.0 XeXenL6RMv10007552m X. laevis.S
JGI 6.0 XeXenL6RMv10019713m X. laevis.S
JGI 4.1 fgenesh1_kg.C_scaffold_31000027 X. tropicalis
ENSEMBL 4.1 ENSXETT00000039553 X. tropicalis
JGI 4.1 e_gw1.31.142.1 X. tropicalis
JGI 4.1 e_gw1.31.151.1 X. tropicalis
JGI 4.1 e_gw1.31.160.1 X. tropicalis
JGI 4.1 e_gw1.31.163.1 X. tropicalis
JGI 4.1 e_gw1.31.164.1 X. tropicalis
JGI 4.1 e_gw1.31.167.1 X. tropicalis
JGI 4.1 gw1.31.142.1 X. tropicalis
JGI 4.1 gw1.31.151.1 X. tropicalis
JGI 4.1 gw1.31.160.1 X. tropicalis
JGI 4.1 gw1.31.163.1 X. tropicalis
JGI 4.1 gw1.31.164.1 X. tropicalis
JGI 4.1 gw1.31.167.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_31000015 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000106 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_31000107 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_31000033 X. tropicalis

mRNAs from cDNA libraries (4)

Clone Accession Species Library Anatomy Stage
XM_002932602 X. tropicalis
IMAGE:7206115 BC082211 X. laevis.S
NM_001094483 X. laevis.S
XM_018230051 X. laevis.L

ESTs (9)

Clone Accession 5'/3' Species Library Anatomy Stage
xtbs29J11 CN088121 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs16P03 CN079571 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TNeu067o01 AL800271 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu076i16 AL782168 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xtbs29J11 CN088120 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs16P03 CN079570 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TNeu067o01 BX683758 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xl245f09 DC107371 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl245f09 DC072947 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15