Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (2) Nucleotides (214) Proteins (56) Interactants (0) Wiki
XB-GENEPAGE-920486

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for fam53a - All

RefSeq mRNAs(4)
Models - Gene (28)
Models - mRNA (35)
mRNAs (13)
ESTs (90)

RefSeq mRNAs (4)

Accession Version name Length Protein Species
NM_001008137 protein FAM53A 1917 bp NP_001008138 X. tropicalis
XM_041587534 XP_041443468.1 protein FAM53A 4363 bp XP_041443468 X. laevis.L
XM_041587539 XP_041443473.1 protein FAM53A 4616 bp XP_041443473 X. laevis.L
NM_001091807 uncharacterized protein LOC443593 3993 bp NP_001085276 X. laevis.S

Models - Gene (28)

Source Version Model Species
NCBI 10.0 XBXT10g005027 X. tropicalis
NCBI 10.1 XBXL10_1g3633 X. laevis.S
NCBI 10.1 XBXL10_1g600 X. laevis.L
ENSEMBL 10.0 fam53a X. tropicalis
JGI 9.1 Xelaev18008860m.g X. laevis.S
JGI 9.1 Xelaev18005022m.g X. laevis.L
Xenbase 9.1 gene3770 X. tropicalis
Xenbase 9.2 gene11198 X. laevis.S
Xenbase 9.2 gene4923 X. laevis.L
ENSEMBL 9.1 fam53a X. tropicalis
JGI 8.0 Xetrov14005443m.g X. tropicalis
JGI 7.1 Xetro.A03267 X. tropicalis
JGI 7.2 Xelaev16046442m.g X. laevis.S
JGI 6.0 XeXenL6RMv10015442m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000003878 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2370021 X. tropicalis
JGI 4.1 e_gw1.237.109.1 X. tropicalis
JGI 4.1 e_gw1.237.110.1 X. tropicalis
JGI 4.1 e_gw1.237.2.1 X. tropicalis
JGI 4.1 gw1.237.109.1 X. tropicalis
JGI 4.1 gw1.237.110.1 X. tropicalis
JGI 4.1 gw1.237.2.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2370015 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2370005 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_237000005 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_237000021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_237000022 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_237000008 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.0 mRNA024943 X. tropicalis
NCBI 10.1 XBmRNA657 X. laevis.L
NCBI 10.1 XBmRNA6631 X. laevis.S
ENSEMBL 10.0 ENSXETT00000103081 X. tropicalis
ENSEMBL 10.0 ENSXETT00000102407 X. tropicalis
ENSEMBL 10.0 ENSXETT00000107589 X. tropicalis
ENSEMBL 10.0 ENSXETT00000008413 X. tropicalis
ENSEMBL 10.0 ENSXETT00000120019 X. tropicalis
JGI 9.1 Xelaev18005022m X. laevis.L
JGI 9.1 Xelaev18008860m X. laevis.S
Xenbase 9.1 rna12321 X. tropicalis
Xenbase 9.2 rna14375 X. laevis.L
Xenbase 9.2 rna32541 X. laevis.S
ENSEMBL 9.1 ENSXETT00000103081 X. tropicalis
ENSEMBL 9.1 ENSXETT00000102407 X. tropicalis
ENSEMBL 9.1 ENSXETT00000008413 X. tropicalis
JGI 8.0 Xetrov14005443m X. tropicalis
JGI 7.1 Xetro.A03267.1 X. tropicalis
JGI 7.1 Xetro.A03267.2 X. tropicalis
JGI 7.2 Xelaev16046442m X. laevis.S
JGI 6.0 XeXenL6RMv10015442m X. laevis.S
JGI 4.1 estExt_fgenesh1_pg.C_2370021 X. tropicalis
ENSEMBL 4.1 ENSXETT00000008413 X. tropicalis
JGI 4.1 e_gw1.237.109.1 X. tropicalis
JGI 4.1 e_gw1.237.110.1 X. tropicalis
JGI 4.1 e_gw1.237.2.1 X. tropicalis
JGI 4.1 gw1.237.109.1 X. tropicalis
JGI 4.1 gw1.237.110.1 X. tropicalis
JGI 4.1 gw1.237.2.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2370015 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2370005 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_237000005 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_237000021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_237000022 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_237000008 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
NM_001008137 X. tropicalis
TNeu101l05 CR942757 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6995048 BC081349 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
XM_012960496 X. tropicalis
XM_012960486 X. tropicalis
IMAGE:6631740 BC108856 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:5156986 BC072942 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
NM_001091807 X. laevis.S
XM_018227941 X. laevis.L
XM_018227931 X. laevis.L
XM_018236514 X. laevis.S
XM_041587539 X. laevis.L
XM_041587534 X. laevis.L

ESTs (90)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:9015096 EL861845 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8858597 EL822726 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8929771 EL678936 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8927973 EL675720 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8925570 EL671977 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8924348 EL669922 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8932247 EL667493 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8931193 EL666114 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8931311 EL665941 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8931021 EL665228 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8871804 EL714687 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865335 EL702570 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8960958 EL661941 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
xtbs23P09 CN084161 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7619057 CX346247 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7560069 CX515252 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7737189 DN024663 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7661587 CX843161 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7659223 CX838821 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7653542 CX822284 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7789821 CX323009 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA025l17 CR574987 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA066g17 CR449000 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA047c19 CR415566 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas130a22 AL959228 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas033m21 AL648459 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu101l05 AL801748 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064d17 AL783486 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas058g04 AL682233 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu052g18 AL673321 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6995048 CF239621 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:5382954 BQ394480 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:8858597 EL822727 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8929771 EL678935 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8927973 EL675719 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8925570 EL671976 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8924348 EL669921 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8931193 EL666113 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8931311 EL665940 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8931021 EL665227 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8871804 EL714686 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865335 EL702569 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
xtbs23P09 CN084160 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7560069 CX515251 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7661587 CX843160 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7659223 CX838820 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7653542 CX822283 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7619057 CX346246 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7600377 CX344960 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA046h10 CR589093 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA025l17 CR574988 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA066g17 CR449001 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA047c19 CR415567 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas130a22 BX760924 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas058g04 BX747422 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu101l05 BX694439 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu052g18 BX689200 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064d17 BX687125 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5382954 BQ394479 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
xl331l21 DC132577 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk77m07ex DC060242 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8825088 EG581740 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8543033 EB482945 5' X. laevis.S NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
IMAGE:8528094 EB476027 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8529987 EB470670 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:7981306 DR724721 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL486p07ex BP699182 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL471e17ex BP693687 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL431c01ex BP679190 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998F098303 BX845192 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL110k05 BJ074030 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:5516265 CF286388 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:6863196 CA986716 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:5156986 CA790593 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:5155921 CA789952 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6634800 BU909203 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6631740 BU906711 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:3402248 BG037875 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:3746267 BF427502 5' X. laevis.S Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
PBX0118H07 AW642545 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0115C02 AW642284 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
rxl331l21 DC096609 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxlk77m07ex DC026777 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:7981306 DR724711 3' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL486p07ex BP732135 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL471e17ex BP727785 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL431c01ex BP716091 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL053d22 BJ086494 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3402248 BG019910 3' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
PBX0003C05 AW633052 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage