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Summary Expression Phenotypes Gene Literature (1) GO Terms (29) Nucleotides (157) Proteins (64) Interactants (17) Wiki
XB-GENEPAGE-854102

Show:     All X. tropicalis X. laevis

Nucleotide sequences for satb1 - All

RefSeq mRNAs(16)
Models - Gene (23)
Models - mRNA (31)
mRNAs (17)
ESTs (30)

RefSeq mRNAs (16)

Accession Version Protein Name Length Protein Species
NM_001100201 NM_001100201.1 DNA-binding protein SATB1 2819 bp NP_001093671 X. tropicalis
XM_012964162 XM_012964162.3 DNA-binding protein SATB1 isoform X1 3688 bp XP_012819616 X. tropicalis
XM_012964163 XM_012964163.3 DNA-binding protein SATB1 isoform X1 3641 bp XP_012819617 X. tropicalis
XM_012964164 XM_012964164.2 DNA-binding protein SATB1 isoform X1 3875 bp XP_012819618 X. tropicalis
XM_031903157 XM_031903157.1 XP_031759017.1 DNA-binding protein SATB1 isoform X2 5102 bp XP_031759017 X. tropicalis
XM_018269263 XM_018269263.2 DNA-binding protein SATB1 isoform X1 4583 bp XP_018124752 X. laevis.S
XM_018269266 XM_018269266.2 DNA-binding protein SATB1 isoform X2 4575 bp XP_018124755 X. laevis.S
XM_018269268 XM_018269268.2 DNA-binding protein SATB1 isoform X3 4512 bp XP_018124757 X. laevis.S
XM_018269270 XM_018269270.2 DNA-binding protein SATB1 isoform X4 4370 bp XP_018124759 X. laevis.S
XM_041567521 XM_041567521.1 XP_041423455.1 DNA-binding protein SATB1 isoform X5 3310 bp XP_041423455 X. laevis.S
XM_018267436 XM_018267436.2 DNA-binding protein SATB1 isoform X1 4904 bp XP_018122925 X. laevis.L
XM_018267437 XM_018267437.2 DNA-binding protein SATB1 isoform X1 5035 bp XP_018122926 X. laevis.L
XM_018267438 XM_018267438.2 DNA-binding protein SATB1 isoform X1 3858 bp XP_018122927 X. laevis.L
XM_018267439 XM_018267439.2 DNA-binding protein SATB1 isoform X3 4903 bp XP_018122928 X. laevis.L
XM_018267440 XM_018267440.2 DNA-binding protein SATB1 isoform X2 4905 bp XP_018122929 X. laevis.L
XM_041565997 XM_041565997.1 XP_041421931.1 DNA-binding protein SATB1 isoform X1 3465 bp XP_041421931 X. laevis.L

Models - Gene (23)

Source Version Model Species
NCBI 10.1 XBXL10_1g28995 X. laevis.S
NCBI 10.1 XBXL10_1g27132 X. laevis.L
NCBI 10.0 XBXT10g009616 X. tropicalis
ENSEMBL 10.0 satb1 X. tropicalis
Xenbase 9.2 gene5587 X. laevis.S
Xenbase 9.2 gene829 X. laevis.L
JGI 9.1 Xelaev18033106m.g X. laevis.S
JGI 9.1 Xelaev18031033m.g X. laevis.L
Xenbase 9.1 gene33836 X. tropicalis
ENSEMBL 9.1 satb1 X. tropicalis
JGI 7.1 Xetro.F01297 X. tropicalis
JGI 6.0 XeXenL6RMv10009046m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000009045 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_26000070 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_260011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_260070 X. tropicalis
JGI 4.1 C_scaffold_26000021 X. tropicalis
JGI 4.1 gw1.26.198.1 X. tropicalis
JGI 4.1 gw1.26.147.1 X. tropicalis
JGI 4.1 e_gw1.26.198.1 X. tropicalis
JGI 4.1 e_gw1.26.147.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_260034 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_26000011 X. tropicalis

mRNAs based on gene models(31)

Source Version Model Species
NCBI 10.1 XBmRNA54547 X. laevis.S
NCBI 10.1 XBmRNA50799 X. laevis.L
NCBI 10.0 mRNA047490 X. tropicalis
ENSEMBL 10.0 ENSXETT00000019817 X. tropicalis
ENSEMBL 10.0 ENSXETT00000019819 X. tropicalis
ENSEMBL 10.0 ENSXETT00000105706 X. tropicalis
ENSEMBL 10.0 ENSXETT00000112161 X. tropicalis
ENSEMBL 10.0 ENSXETT00000120623 X. tropicalis
Xenbase 9.2 rna2420 X. laevis.L
Xenbase 9.2 rna16350 X. laevis.S
JGI 9.1 Xelaev18031033m X. laevis.L
ENSEMBL 9.1 ENSXETT00000019817 X. tropicalis
ENSEMBL 9.1 ENSXETT00000019819 X. tropicalis
JGI 9.1 Xelaev18033106m X. laevis.S
Xenbase 9.1 rna63763 X. tropicalis
JGI 7.1 Xetro.F01297.3 X. tropicalis
JGI 7.1 Xetro.F01297.2 X. tropicalis
JGI 7.1 Xetro.F01297.1 X. tropicalis
JGI 6.0 XeXenL6RMv10009046m X. laevis.S
JGI 4.1 fgenesh1_pg.C_scaffold_26000070 X. tropicalis
JGI 4.1 e_gw1.26.147.1 X. tropicalis
JGI 4.1 e_gw1.26.198.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000019817 X. tropicalis
ENSEMBL 4.1 ENSXETT00000019819 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_260070 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_260011 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_260034 X. tropicalis
JGI 4.1 C_scaffold_26000021 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_26000011 X. tropicalis
JGI 4.1 gw1.26.147.1 X. tropicalis
JGI 4.1 gw1.26.198.1 X. tropicalis

mRNAs from cDNA libraries (17)

Clone Accession Species Library Anatomy Stage
IMAGE:7657489 BC136084 X. tropicalis NIH_XGC_tropBrn3 brain frog
NM_001100201 X. tropicalis
XM_012964162 X. tropicalis
XM_012964163 X. tropicalis
XM_012964164 X. tropicalis
XM_031903157 X. tropicalis
XM_018269263 X. laevis.S
XM_018269266 X. laevis.S
XM_018269268 X. laevis.S
XM_018269270 X. laevis.S
XM_041567521 X. laevis.S
XM_018267436 X. laevis.L
XM_018267437 X. laevis.L
XM_018267438 X. laevis.L
XM_018267439 X. laevis.L
XM_018267440 X. laevis.L
XM_041565997 X. laevis.L

ESTs (30)

Clone Accession 5'/3' Species Library Anatomy Stage
xtbs34L08 CN091329 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7562528 CX466808 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519463 CX479398 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7552893 CX495624 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA006c11 CR576515 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7655922 CX826790 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7657489 CX829169 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7660428 CX841333 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7793629 CX885685 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7688833 CX911896 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7657625 DR831716 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:8924314 EL670007 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8922798 EL674213 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
TGas034h05 AL649238 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
xtbs34L08 CN091328 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7657625 DR831715 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7660428 CX841332 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA006c11 CR576516 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7655922 CX826789 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7657489 CX829168 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7562528 CX466807 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8922798 EL674212 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7519463 CX479397 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7793629 CX885684 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7552893 CX495623 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8924314 EL670006 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7688833 CX911895 3' X. tropicalis NIH_XGC_tropTe4 testis frog
XL178j11 BJ616880 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:6877730 CB206431 5' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
XL178j11 BJ633401 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5