Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (5) Nucleotides (178) Proteins (64) Interactants (12) Wiki
XB-GENEPAGE-6045505

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for capn13 - All

RefSeq mRNAs(5)
Models - Gene (36)
Models - mRNA (44)
mRNAs (9)
ESTs (62)

RefSeq mRNAs (5)

Accession Version name Length Protein Species
NM_001008024 NM_001008024.2 calpain-13 3082 bp NP_001008025 X. tropicalis
XM_041564223 XM_041564223.1 XP_041420157.1 calpain-13 2835 bp XP_041420157 X. laevis.S
XM_041562065 XM_041562065.1 XP_041417999.1 calpain 13 L homeolog isoform X1 3470 bp XP_041417999 X. laevis.L
XM_041562066 XM_041562066.1 XP_041418000.1 calpain 13 L homeolog isoform X1 3539 bp XP_041418000 X. laevis.L
NM_001086019 NM_001086019.1 calpain 13 L homeolog 2854 bp NP_001079488 X. laevis.L

Models - Gene (36)

Source Version Model Species
NCBI 10.0 XBXT10g016988 X. tropicalis
NCBI 10.1 XBXL10_1g22709 X. laevis.L
NCBI 10.1 XBXL10_1g24905 X. laevis.S
ENSEMBL 10.0 capn13 X. tropicalis
JGI 9.1 Xelaev18026315m.g X. laevis.L
JGI 9.1 Xelaev18028611m.g X. laevis.S
Xenbase 9.1 gene1143 X. tropicalis
Xenbase 9.2 gene17825 X. laevis.L
Xenbase 9.2 gene13942 X. laevis.S
ENSEMBL 9.1 capn13 X. tropicalis
JGI 7.1 Xetro.E01659 X. tropicalis
JGI 7.2 Xelaev16000594m.g X. laevis.L
JGI 6.0 XeXenL6RMv10019779m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000022056 X. tropicalis
JGI 4.1 e_gw1.413.184.1 X. tropicalis
JGI 4.1 e_gw1.413.12.1 X. tropicalis
JGI 4.1 e_gw1.413.179.1 X. tropicalis
JGI 4.1 e_gw1.413.183.1 X. tropicalis
JGI 4.1 e_gw1.413.4.1 X. tropicalis
JGI 4.1 gw1.413.12.1 X. tropicalis
JGI 4.1 gw1.413.179.1 X. tropicalis
JGI 4.1 gw1.413.4.1 X. tropicalis
JGI 4.1 gw1.413.183.1 X. tropicalis
JGI 4.1 gw1.413.184.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4130021 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4130183 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4130184 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4130003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4130022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4130023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4130005 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_413000001 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_413000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_413000022 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_413000023 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_413000005 X. tropicalis

mRNAs based on gene models(44)

Source Version Model Species
NCBI 10.0 mRNA084158 X. tropicalis
NCBI 10.1 XBmRNA42329 X. laevis.L
NCBI 10.1 XBmRNA46462 X. laevis.S
ENSEMBL 10.0 ENSXETT00000047741 X. tropicalis
ENSEMBL 10.0 ENSXETT00000076966 X. tropicalis
ENSEMBL 10.0 ENSXETT00000091120 X. tropicalis
ENSEMBL 10.0 ENSXETT00000079256 X. tropicalis
JGI 9.1 Xelaev18026315m X. laevis.L
JGI 9.1 Xelaev18028611m X. laevis.S
Xenbase 9.1 rna3669 X. tropicalis
Xenbase 9.2 rna52091 X. laevis.L
Xenbase 9.2 rna40588 X. laevis.S
ENSEMBL 9.1 ENSXETT00000091120 X. tropicalis
ENSEMBL 9.1 ENSXETT00000076966 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079256 X. tropicalis
ENSEMBL 9.1 ENSXETT00000047741 X. tropicalis
JGI 7.1 Xetro.E01659.1 X. tropicalis
JGI 7.2 Xelaev16000594m X. laevis.L
JGI 6.0 XeXenL6RMv10019779m X. laevis.L
JGI 4.1 e_gw1.413.184.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000054932 X. tropicalis
ENSEMBL 4.1 ENSXETT00000047744 X. tropicalis
ENSEMBL 4.1 ENSXETT00000047741 X. tropicalis
JGI 4.1 e_gw1.413.12.1 X. tropicalis
JGI 4.1 e_gw1.413.179.1 X. tropicalis
JGI 4.1 e_gw1.413.183.1 X. tropicalis
JGI 4.1 e_gw1.413.4.1 X. tropicalis
JGI 4.1 gw1.413.12.1 X. tropicalis
JGI 4.1 gw1.413.179.1 X. tropicalis
JGI 4.1 gw1.413.4.1 X. tropicalis
JGI 4.1 gw1.413.183.1 X. tropicalis
JGI 4.1 gw1.413.184.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4130021 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4130183 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4130184 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4130003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4130022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4130023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4130005 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_413000001 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_413000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_413000022 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_413000023 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_413000005 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
NM_001008024 X. tropicalis
TNeu133h08 CR926209 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6977508 BC080904 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:5542506 BC043810 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001086019 X. laevis.L
XM_018264919 X. laevis.S
XM_041562066 X. laevis.L
XM_041562065 X. laevis.L
XM_041564223 X. laevis.S

ESTs (62)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8891684 EL865099 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8951715 EL658907 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
st7d13 DC175073 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st4n11 DC174366 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st11f10 DC165981 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8944314 EG650906 5' X. tropicalis NICHD_XGC_tropInt_54 intestine frog
CABC9503 DR840760 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7639793 CX385628 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7721232 CX996443 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7719854 CX983858 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7530320 CX419498 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA003l04 CR560359 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA066m12 CR449609 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA037k16 CR419211 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA013f24 CR412518 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA013f18 CR412515 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA038h14 BX715497 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu138p11 AL796890 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu133h08 AL789280 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6994859 CF239818 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6977508 CF224534 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TNeu144m04 AL789666 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8891684 EL865100 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
rst4n11 DC144040 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst7d13 DC144745 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst11f10 DC135913 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
CABC9503 DR840759 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7721232 CX996442 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7719854 CX983857 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7639793 CX385627 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA003l04 CR560360 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA037k16 CR419212 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:6977508 CF224533 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
xlk147p17ex DC051087 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8319162 DY564999 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL492d05ex BP707684 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998O1912241 BX850920 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL108k16 BJ073017 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL103a08 BJ057746 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL083j15 BJ065617 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL068a18 BJ062454 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL024k21 BJ035914 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL024i23 BJ035878 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL038k10 BJ039832 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:4970245 CF290347 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4970245 CF290346 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5542506 BQ737565 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4202230 BG233469 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:3400355 BG037302 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGE:3398838 BE576044 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
rxlk147p17ex DC017750 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL492d05ex BP733863 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL159j06 BJ629023 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL108k16 BJ089945 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL103a08 BJ075583 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL038k10 BJ053386 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL024k21 BJ050511 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL007d23 BJ046396 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL024i23 BJ050476 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL021p11 BJ050010 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:4202230 BG161312 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:3400355 BG020185 3' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25