Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (2) Nucleotides (119) Proteins (57) Interactants (125) Wiki
XB-GENEPAGE-5952241

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for rabgef1 - All

RefSeq mRNAs(5)
Models - Gene (26)
Models - mRNA (36)
mRNAs (11)
ESTs (25)

RefSeq mRNAs (5)

Accession Version name Length Protein Species
NM_204000 NM_204000.1 rab5 GDP/GTP exchange factor 1585 bp NP_989331 X. tropicalis
XM_041583692 XM_041583692.1 XP_041439626.1 rab5 GDP/GTP exchange factor isoform X1 2452 bp XP_041439626 X. laevis.S
XM_041583693 XM_041583693.1 XP_041439627.1 rab5 GDP/GTP exchange factor isoform X1 2416 bp XP_041439627 X. laevis.S
XM_041581127 XM_041581127.1 XP_041437061.1 RAB guanine nucleotide exchange factor (GEF) 1 L homeolog isoform X1 2666 bp XP_041437061 X. laevis.L
NM_001096567 NM_001096567.1 RAB guanine nucleotide exchange factor (GEF) 1 L homeolog 2330 bp NP_001090036 X. laevis.L

Models - Gene (26)

Source Version Model Species
NCBI 10.0 XBXT10g011809 X. tropicalis
NCBI 10.1 XBXL10_1g6739 X. laevis.L
NCBI 10.1 XBXL10_1g9492 X. laevis.S
ENSEMBL 10.0 rabgef1 X. tropicalis
JGI 9.1 Xelaev18011932m.g X. laevis.L
JGI 9.1 Xelaev18014615m.g X. laevis.S
Xenbase 9.1 gene4251 X. tropicalis
Xenbase 9.2 gene6489 X. laevis.L
Xenbase 9.2 gene11309 X. laevis.S
ENSEMBL 9.1 rabgef1 X. tropicalis
JGI 8.0 Xetrov14007315m.g X. tropicalis
JGI 7.1 Xetro.B00758 X. tropicalis
JGI 7.2 Xelaev16056871m.g X. laevis.L
JGI 6.0 XeXenL6RMv10018237m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000026471 X. tropicalis
JGI 4.1 e_gw1.61.118.1 X. tropicalis
JGI 4.1 e_gw1.61.193.1 X. tropicalis
JGI 4.1 e_gw1.61.76.1 X. tropicalis
JGI 4.1 gw1.61.118.1 X. tropicalis
JGI 4.1 gw1.61.76.1 X. tropicalis
JGI 4.1 gw1.61.193.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_61000010 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_61000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_61000099 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_61000100 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_61000101 X. tropicalis

mRNAs based on gene models(36)

Source Version Model Species
NCBI 10.0 mRNA058590 X. tropicalis
NCBI 10.1 XBmRNA12633 X. laevis.L
NCBI 10.1 XBmRNA17707 X. laevis.S
ENSEMBL 10.0 ENSXETT00000055810 X. tropicalis
ENSEMBL 10.0 ENSXETT00000083592 X. tropicalis
ENSEMBL 10.0 ENSXETT00000101542 X. tropicalis
ENSEMBL 10.0 ENSXETT00000055809 X. tropicalis
JGI 9.1 Xelaev18011932m X. laevis.L
JGI 9.1 Xelaev18014615m X. laevis.S
Xenbase 9.1 rna13867 X. tropicalis
Xenbase 9.2 rna18981 X. laevis.L
Xenbase 9.2 rna32886 X. laevis.S
ENSEMBL 9.1 ENSXETT00000055809 X. tropicalis
ENSEMBL 9.1 ENSXETT00000072555 X. tropicalis
ENSEMBL 9.1 ENSXETT00000055810 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085704 X. tropicalis
ENSEMBL 9.1 ENSXETT00000083592 X. tropicalis
ENSEMBL 9.1 ENSXETT00000101542 X. tropicalis
JGI 8.0 Xetrov14007315m X. tropicalis
JGI 7.1 Xetro.B00758.1 X. tropicalis
JGI 7.1 Xetro.B00758.2 X. tropicalis
JGI 7.2 Xelaev16056871m X. laevis.L
JGI 6.0 XeXenL6RMv10018237m X. laevis.L
JGI 4.1 e_gw1.61.118.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000055810 X. tropicalis
ENSEMBL 4.1 ENSXETT00000055809 X. tropicalis
JGI 4.1 e_gw1.61.193.1 X. tropicalis
JGI 4.1 e_gw1.61.76.1 X. tropicalis
JGI 4.1 gw1.61.118.1 X. tropicalis
JGI 4.1 gw1.61.76.1 X. tropicalis
JGI 4.1 gw1.61.193.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_61000010 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_61000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_61000099 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_61000100 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_61000101 X. tropicalis

mRNAs from cDNA libraries (11)

Clone Accession Species Library Anatomy Stage
NM_204000 X. tropicalis
IMAGE:5379206 BC064156 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
XM_012956677 X. tropicalis
XM_012956676 X. tropicalis
IMAGE:6638103 BC097679 X. laevis.L
NM_001096567 X. laevis.L
XM_018249128 X. laevis.S
XM_018249127 X. laevis.S
XM_041581127 X. laevis.L
XM_041583693 X. laevis.S
XM_041583692 X. laevis.S

ESTs (25)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8913488 EL825877 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
CAAO4006 CX934780 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7762199 DR884098 5' X. tropicalis NIH_XGC_tropTe6 testis frog
IMAGE:7703160 CX939313 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7521324 CX470052 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5379206 BQ522630 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:8913488 EL825878 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
CAAO4006 CX934779 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7521324 CX470051 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7762199 DR884097 3' X. tropicalis NIH_XGC_tropTe6 testis frog
IMAGE:7703160 CX939312 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:5379206 BQ522629 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
xl289c17 DC120104 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:8640879 EB731870 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
XL192c15 BJ620196 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL191c15 BJ619927 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL189c15 BJ619415 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:4957511 BI312617 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
PBX0040C04 AW635931 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0016B09 AW634112 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
rxl289c17 DC085330 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:8640879 EB727695 3' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
XL192c15 BJ636826 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL191c15 BJ636558 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL189c15 BJ636051 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5