Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (3) Nucleotides (137) Proteins (59) Interactants (112) Wiki
XB-GENEPAGE-5916204

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for vti1a - Xenopus tropicalis

RefSeq mRNAs(4)
Models - Gene (13)
Models - mRNA (16)
mRNAs (5)
ESTs (35)

RefSeq mRNAs (4)

Accession Version name Length Protein Species
NM_001078762 NM_001078762.1 vesicle transport through interaction with t-SNAREs homolog 1A 1555 bp NP_001072230 X. tropicalis
XM_031905169 XM_031905169.1 XP_031761029.1 vesicle transport through interaction with t-SNAREs homolog 1A isoform X1 1503 bp XP_031761029 X. tropicalis
XM_031905170 XM_031905170.1 XP_031761030.1 vesicle transport through interaction with t-SNAREs homolog 1A isoform X2 1477 bp XP_031761030 X. tropicalis
XM_031905171 XM_031905171.1 XP_031761031.1 vesicle transport through interaction with t-SNAREs homolog 1A isoform X3 1516 bp XP_031761031 X. tropicalis

Models - Gene (13)

Source Version Model Species
NCBI 10.0 XBXT10g001092 X. tropicalis
ENSEMBL 10.0 vti1a X. tropicalis
Xenbase 9.1 gene23839 X. tropicalis
JGI 7.1 Xetro.G00019 X. tropicalis
ENSEMBL 4.1 ENSXETG00000028018 X. tropicalis
JGI 4.1 e_gw1.2230.13.1 X. tropicalis
JGI 4.1 gw1.2230.12.1 X. tropicalis
JGI 4.1 e_gw1.2230.11.1 X. tropicalis
JGI 4.1 e_gw1.2230.12.1 X. tropicalis
JGI 4.1 e_gw1.2230.18.1 X. tropicalis
JGI 4.1 gw1.2230.11.1 X. tropicalis
JGI 4.1 gw1.2230.13.1 X. tropicalis
JGI 4.1 gw1.2230.18.1 X. tropicalis

mRNAs based on gene models(16)

Source Version Model Species
NCBI 10.0 mRNA005484 X. tropicalis
ENSEMBL 10.0 ENSXETT00000107147 X. tropicalis
ENSEMBL 10.0 ENSXETT00000086083 X. tropicalis
ENSEMBL 10.0 ENSXETT00000108520 X. tropicalis
ENSEMBL 10.0 ENSXETT00000110533 X. tropicalis
Xenbase 9.1 rna47657 X. tropicalis
JGI 7.1 Xetro.G00019.1 X. tropicalis
JGI 4.1 e_gw1.2230.13.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000058164 X. tropicalis
JGI 4.1 e_gw1.2230.11.1 X. tropicalis
JGI 4.1 e_gw1.2230.12.1 X. tropicalis
JGI 4.1 e_gw1.2230.18.1 X. tropicalis
JGI 4.1 gw1.2230.11.1 X. tropicalis
JGI 4.1 gw1.2230.12.1 X. tropicalis
JGI 4.1 gw1.2230.13.1 X. tropicalis
JGI 4.1 gw1.2230.18.1 X. tropicalis

mRNAs from cDNA libraries (5)

Clone Accession Species Library Anatomy Stage
NM_001078762 X. tropicalis
IMAGE:7707931 BC118814 X. tropicalis NIH_XGC_tropTe5 testis frog
XM_031905171 X. tropicalis
XM_031905170 X. tropicalis
XM_031905169 X. tropicalis

ESTs (35)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8884718 EL841326 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8856216 EL819035 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8958257 EL658508 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8966870 EL657099 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8952161 EL655856 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
IMAGE:8951300 EL652618 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
xtbs33N11 CN090600 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs20L19 CN082154 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
st7d10 DC175070 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7616519 CX393022 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609448 CX410869 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7601908 CX365148 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7542889 CX458221 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7707931 CX961061 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7672297 CX881080 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7519012 CX478963 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas124a23 AL957092 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA056g10 BX730942 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA020n24 BX712442 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:6983075 CF226388 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6977482 CF224572 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6983075 CF147554 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:8884718 EL841327 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8856216 EL819036 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
xtbs22A24 CN083141 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs20L19 CN082153 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
rst7d10 DC144742 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7519012 CX478962 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7609448 DR895067 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7707931 CX961060 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7672297 CX881079 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
TGas124a21 BX760227 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA020n24 BX731269 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA056g10 BX730943 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:6977482 CF224573 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27